Literature DB >> 33308996

Chromatin Regulation through Ubiquitin and Ubiquitin-like Histone Modifications.

Robert M Vaughan1, Ariana Kupai1, Scott B Rothbart2.   

Abstract

Chromatin functions are influenced by the addition, removal, and recognition of histone post-translational modifications (PTMs). Ubiquitin and ubiquitin-like (UBL) PTMs on histone proteins can function as signaling molecules by mediating protein-protein interactions. Fueled by the identification of novel ubiquitin and UBL sites and the characterization of the writers, erasers, and readers, the breadth of chromatin functions associated with ubiquitin signaling is emerging. Here, we highlight recently appreciated roles for histone ubiquitination in DNA methylation control, PTM crosstalk, nucleosome structure, and phase separation. We also discuss the expanding diversity and functions associated with histone UBL modifications. We conclude with a look toward the future and pose key questions that will drive continued discovery at the interface of epigenetics and ubiquitin signaling.
Copyright © 2020 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  DNA methylation; epigenetics; histones; phase separation; post-translational modifications; ubiquitin-like modifications; ubiquitination

Mesh:

Substances:

Year:  2020        PMID: 33308996      PMCID: PMC7954875          DOI: 10.1016/j.tibs.2020.11.005

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  99 in total

1.  Ubiquitin-activating enzyme UBA1 is required for cellular response to DNA damage.

Authors:  Pavel Moudry; Claudia Lukas; Libor Macurek; Hana Hanzlikova; Zdenek Hodny; Jiri Lukas; Jiri Bartek
Journal:  Cell Cycle       Date:  2012-04-15       Impact factor: 4.534

2.  Structural basis of the crosstalk between histone H2B monoubiquitination and H3 lysine 79 methylation on nucleosome.

Authors:  Tonghui Yao; Wei Jing; Zhiguo Hu; Ming Tan; Mi Cao; Qianmin Wang; Yan Li; Guiyong Yuan; Ming Lei; Jing Huang
Journal:  Cell Res       Date:  2019-02-15       Impact factor: 25.617

3.  Histone 2B can be modified by the attachment of ubiquitin.

Authors:  M H West; W M Bonner
Journal:  Nucleic Acids Res       Date:  1980-10-24       Impact factor: 16.971

4.  EZH2 generates a methyl degron that is recognized by the DCAF1/DDB1/CUL4 E3 ubiquitin ligase complex.

Authors:  Ji Min Lee; Jason S Lee; Hyunkyung Kim; Kyeongkyu Kim; Hyejin Park; Ji-Young Kim; Seung Hoon Lee; Ik Soo Kim; Joomyung Kim; Minkyoung Lee; Chin Ha Chung; Sang-Beom Seo; Jong-Bok Yoon; Eunyoung Ko; Dong-Young Noh; Keun Il Kim; Kyeong Kyu Kim; Sung Hee Baek
Journal:  Mol Cell       Date:  2012-10-11       Impact factor: 17.970

5.  Structural Basis of H2B Ubiquitination-Dependent H3K4 Methylation by COMPASS.

Authors:  Peter L Hsu; Hui Shi; Calvin Leonen; Jianming Kang; Champak Chatterjee; Ning Zheng
Journal:  Mol Cell       Date:  2019-11-13       Impact factor: 17.970

6.  DNA methylation requires a DNMT1 ubiquitin interacting motif (UIM) and histone ubiquitination.

Authors:  Weihua Qin; Patricia Wolf; Nan Liu; Stephanie Link; Martha Smets; Federica La Mastra; Ignasi Forné; Garwin Pichler; David Hörl; Karin Fellinger; Fabio Spada; Ian Marc Bonapace; Axel Imhof; Hartmann Harz; Heinrich Leonhardt
Journal:  Cell Res       Date:  2015-06-12       Impact factor: 25.617

7.  Comparative biochemical analysis of UHRF proteins reveals molecular mechanisms that uncouple UHRF2 from DNA methylation maintenance.

Authors:  Robert M Vaughan; Bradley M Dickson; Evan M Cornett; Joseph S Harrison; Brian Kuhlman; Scott B Rothbart
Journal:  Nucleic Acids Res       Date:  2018-05-18       Impact factor: 16.971

8.  The DNA repair protein SHPRH is a nucleosome-stimulated ATPase and a nucleosome-E3 ubiquitin ligase.

Authors:  Joanna Brühl; Jonathan Trautwein; Agnes Schäfer; Uwe Linne; Karim Bouazoune
Journal:  Epigenetics Chromatin       Date:  2019-08-21       Impact factor: 4.954

9.  Structural and biochemical analyses of monoubiquitinated human histones H2B and H4.

Authors:  Shinichi Machida; Satoshi Sekine; Yuuki Nishiyama; Naoki Horikoshi; Hitoshi Kurumizaka
Journal:  Open Biol       Date:  2016-06       Impact factor: 6.411

10.  Chromatin structure and its chemical modifications regulate the ubiquitin ligase substrate selectivity of UHRF1.

Authors:  Robert M Vaughan; Bradley M Dickson; Matthew F Whelihan; Andrea L Johnstone; Evan M Cornett; Marcus A Cheek; Christine A Ausherman; Martis W Cowles; Zu-Wen Sun; Scott B Rothbart
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-13       Impact factor: 11.205

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  11 in total

Review 1.  Signalling mechanisms and cellular functions of SUMO.

Authors:  Alfred C O Vertegaal
Journal:  Nat Rev Mol Cell Biol       Date:  2022-06-24       Impact factor: 113.915

Review 2.  Nuclear and Cytoplasmatic Players in Mitochondria-Related CNS Disorders: Chromatin Modifications and Subcellular Trafficking.

Authors:  Matteo Gasparotto; Yi-Shin Lee; Alessandra Palazzi; Marcella Vacca; Francesco Filippini
Journal:  Biomolecules       Date:  2022-04-23

3.  FGFR2-BRD4 Axis Regulates Transcriptional Networks of Histone 3 Modification and Synergy Between Its Inhibitors and PD-1/PD-L1 in a TNBC Mouse Model.

Authors:  Josh Haipeng Lei; Lei Zhang; Zhenyi Wang; Raoul Peltier; Yusheng Xie; Ganchao Chen; Shiqi Lin; Kai Miao; Chu-Xia Deng; Hongyan Sun
Journal:  Front Immunol       Date:  2022-04-25       Impact factor: 8.786

4.  Histone Modifications, Internucleosome Dynamics, and DNA Stresses: How They Cooperate to "Functionalize" Nucleosomes.

Authors:  Wladyslaw A Krajewski
Journal:  Front Genet       Date:  2022-04-28       Impact factor: 4.772

Review 5.  The ubiquitin proteoform problem.

Authors:  Kirandeep K Deol; Eric R Strieter
Journal:  Curr Opin Chem Biol       Date:  2021-04-01       Impact factor: 8.972

Review 6.  Concerto on Chromatin: Interplays of Different Epigenetic Mechanisms in Plant Development and Environmental Adaptation.

Authors:  Jiao Liu; Cheng Chang
Journal:  Plants (Basel)       Date:  2021-12-14

Review 7.  An Emerging Role for Epigenetics in Cerebral Palsy.

Authors:  Brigette Romero; Karyn G Robinson; Mona Batish; Robert E Akins
Journal:  J Pers Med       Date:  2021-11-12

Review 8.  Localized Proteasomal Degradation: From the Nucleus to Cell Periphery.

Authors:  Xing Guo
Journal:  Biomolecules       Date:  2022-01-29

9.  HSF1 phosphorylation establishes an active chromatin state via the TRRAP-TIP60 complex and promotes tumorigenesis.

Authors:  Mitsuaki Fujimoto; Ryosuke Takii; Masaki Matsumoto; Mariko Okada; Keiich I Nakayama; Ryuichiro Nakato; Katsunori Fujiki; Katsuhiko Shirahige; Akira Nakai
Journal:  Nat Commun       Date:  2022-07-29       Impact factor: 17.694

Review 10.  Histone Mono-Ubiquitination in Transcriptional Regulation and Its Mark on Life: Emerging Roles in Tissue Development and Disease.

Authors:  Liat Oss-Ronen; Tzlil Sarusi; Idan Cohen
Journal:  Cells       Date:  2022-08-04       Impact factor: 7.666

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