| Literature DB >> 33305091 |
Charles S Mayo1, Michelle Mierzwa1, Jean M Moran1, Martha M Matuszak1, Joel Wilkie1, Grace Sun1, John Yao1, Grant Weyburn1, Carlos J Anderson1, Dawn Owen1, Arvind Rao2.
Abstract
PURPOSE: We combined clinical practice changes, standardizations, and technology to automate aggregation, integration, and harmonization of comprehensive patient data from the multiple source systems used in clinical practice into a big data analytics resource system (BDARS). We then developed novel artificial intelligence algorithms, coupled with the BDARS, to identify structure dose volume histograms (DVH) metrics associated with dysphagia. METHODS AND MATERIALS: From the BDARS harmonized data of ≥22,000 patients, we identified 132 patients recently treated for head and neck cancer who also demonstrated dysphagia scores that worsened from base line to a maximum grade ≥2. We developed a method that used both physical and biologically corrected (α/β = 2.5) DVH curves to test both absolute and percentage volume based DVH metrics. Combining a statistical categorization algorithm with machine learning (SCA-ML) provided more extensive detailing of response threshold evidence than either approach alone. A sensitivity guided, minimum input, machine learning (ML) model was iteratively constructed to identify the key structure DVH metric thresholds.Entities:
Year: 2020 PMID: 33305091 PMCID: PMC7718557 DOI: 10.1016/j.adro.2019.12.007
Source DB: PubMed Journal: Adv Radiat Oncol ISSN: 2452-1094
Characteristics of patients demonstrating worsening dysphagia
| Characteristics of 132 out of 439 demonstrating worsening dysphagia | |
|---|---|
| Sex | |
| Male | 35 |
| Female | 97 |
| Age (median [25% quantile, 75% quantile]) | 62 [53, 67] |
| Count of patients by diagnosis site | |
| Pharynx | 63 |
| Oral cavity | 22 |
| Larynx | 22 |
| Nasopharynx | 8 |
| Other | 17 |
| Follow-up days (median [25% quantile, 75% quantile]) | 152 [52, 270] |
| Count of patients with dysphagia details | |
| Max dysphagia = 1 | 54 |
| Max dysphagia = 2 | 54 |
| Max dysphagia = 3 | 24 |
| Max-Min dysphagia = 1 | 63 |
| Max-Min dysphagia = 2 | 50 |
| Max-Min dysphagia = 3 | 19 |
Summary statistics from statistical screening metrics set and combined statistical categorization algorithm and machine learning (SCA-ML) for the top physical and bio-corrected dose metrics for each swallowing structure examined
| Structure | DVH metric | TV | N | AUC | PPV | NPV | SN | SP | OR | PETR | SCA-ML |
|---|---|---|---|---|---|---|---|---|---|---|---|
| SPC | D25% (Gy) | 50.4 | 129 | 0.68 | 0.69 | 0.76 | 0.92 | 0.37 | 2.9 | 0.55 | 4.1 |
| SPC | D20% (EQ2D Gy) (✓) | 47.7 | 129 | 0.68 | 0.70 | 0.90 | 0.97 | 0.35 | 7.0 | 0.57 | 4.1 |
| Parotid_low | D60% (Gy) | 13.2 | 123 | 0.66 | 0.72 | 0.55 | 0.69 | 0.58 | 1.6 | 0.47 | 2.4 |
| Parotid_low | D80% (EQD2 Gy) (✓) | 6.0 | 123 | 0.65 | 0.75 | 0.52 | 0.6 | 0.69 | 1.6 | 0.44 | 2.9 |
| SG_high | D35% (Gy) (✓) | 61.7 | 124 | 0.68 | 0.74 | 0.58 | 0.66 | 0.67 | 1.7 | 0.47 | 2.60 |
| SG_high | D30% (EQD2 Gy) | 57.8 | 124 | 0.68 | 0.73 | 0.58 | 0.69 | 0.63 | 1.7 | 0.48 | 1.80 |
| Oral_cavity | D95% (Gy) (✓) | 15.3 | 129 | 0.68 | 0.78 | 0.53 | 0.55 | 0.77 | 1.7 | 0.45 | 2.5 |
| Oral_cavity | D96% (EQD2 Gy) | 9.8 | 129 | 0.67 | 0.78 | 0.53 | 0.55 | 0.77 | 1.7 | 0.45 | 2.1 |
| Parotid_high | D28.5cc (Gy) (✓) | 13.9 | 129 | 0.66 | 0.80 | 0.68 | 0.78 | 0.70 | 2.5 | 0.52 | 2.4 |
| Parotid_high | D28.5cc (EQD2 Gy) | 8.9 | 129 | 0.66 | 0.8 | 0.68 | 0.78 | 0.70 | 2.5 | 0.52 | 2.4 |
| Esophagus | D2cc (Gy) (✓) | 22.6 | 124 | 0.61 | 0.69 | 0.59 | 0.82 | 0.42 | 1.7 | 0.45 | 1.5 |
| Esophagus | D3cc (EQD2 Gy) | 24.3 | 121 | 0.58 | 0.79 | 0.45 | 0.36 | 0.85 | 1.4 | 0.25 | 1.5 |
| IPC | D90% (Gy) (✓) | 12.8 | 124 | 0.66 | 0.73 | 0.59 | 0.73 | 0.59 | 1.8 | 0.48 | 1.4 |
| IPC | D95% (EQD2 Gy) | 7.5 | 124 | 0.66 | 0.72 | 0.63 | 0.80 | 0.53 | 2.0 | 0.50 | 1.2 |
| Larynx | D25% (Gy) (☒) | 21.2 | 110 | 0.60 | 0.67 | 0.88 | 0.97 | 0.31 | 5.4 | 0.49 | 4.5 |
| Larynx | D25% (EQD2 Gy) | 15 | 110 | 0.59 | 0.66 | 0.81 | 0.95 | 0.29 | 3.5 | 0.46 | 3.7 |
| SG_low | D45% (Gy) (☒) | 28.2 | 95 | 0.71 | 0.73 | 0.85 | 0.95 | 0.46 | 4.9 | 0.60 | 5.4 |
| SG_low | D35% (EQD2 Gy) | 23.5 | 95 | 0.69 | 0.70 | 0.93 | 0.98 | 0.35 | 9.9 | 0.58 | 4.2 |
Columns correspond to the threshold value (TV), number of plans with the structure drawn (N), area under the curve (AUC) from the receiver operator characteristic analysis, positive predictive value (PPV), negative predictive value (NPV), sensitivity (SN), specificity (SP), and risk ratio determined using TV to construct a 2 × 2 contingency table. Structures not contoured on at least 90% of treatment plans (☒) are noted. For each structure, dose volume histograms (DVH) metric with the higher statistical categorization algorithm with machine learning (SCA-M) score is checked ( ✓ ).
Abbreviations: IPC = inferior pharyngeal constrictor; PETR = positive evidence of a threshold response; SG = submandibular gland; SPC = superior pharyngeal constrictor.
Figure 1For patients demonstrating dysphagia scores that worsened from start of treatment, the median time to the first maximum toxicity record was 37 days. Median time to the last occurrence of the maximum score was 48 days.
Figure 2(a) Plots of statistical dose volume histograms (DVH) curves. Superior constrictor muscle (SCP) bio-corrected DVH curves are shown for patients with (red) and without (blue) worsening dysphagia. To clarify visualization and provide more quantitative detail, statistical DVH curves show median (dashed line) and 70% confidence intervals of DVH curves for (b) SCP Dx% (EQD2 Gy), (c) SCP Dx% (Gy), (d) the submandibular gland receiving the higher relative mean dose (SG_high) Dx [Gy], (e) the submandibular gland receiving the lower relative mean dose (SG_low) Dx [Gy], and (f) larynx Dx [Gy]. SG_low and larynx were not included in multistructure model due to lack of contouring on at least 90% of plans (☒). The DVH metric and threshold with the highest combined statistical categorization algorithm and machine learning (SCA-ML) score is shown for each (black dot).
Figure 3(a) Illustration of combined statistical categorization algorithm and machine learning (SCA-ML) plots for determining dose volume histograms (DVH) metric demonstrating strong evidence of dose-response threshold for (b) superior constrictor muscle (SCP) Dx% (EQD2 Gy), (c) SCP Dx% (Gy), (d) the submandibular gland receiving the higher relative mean dose (SG_high) Dx (Gy), (e) the submandibular gland receiving lower relative mean dose (SG_low) Dx (Gy), and (f) larynx Dx (Gy). Area under the curve (AUC) values are plotted for each metric with color coding and symbol size differentiating P values for Kolmogorov-Smirnov test. Positive evidence of threshold response (PETR) and SCA-ML scores are scaled using the highest relative value to select metric. The threshold dose determined for each metric is plotted (dashed line). Peak SCA-ML values and thresholds are circled on the graph.
Figure 4(a) Univariate plots of worsening dysphagia versus ranking metrics using combined statistical categorization algorithm and machine learning (SCA-ML) selected for (b) superior constrictor muscle (SCP) Dx% (EQD2 Gy), (c) SCP Dx% (Gy), (d) the submandibular gland receiving the higher relative mean dose (SG_high) Dx (Gy), (e) the submandibular gland receiving lower relative mean dose (SG_low) Dx (Gy), and (f) larynx Dx (Gy). Threshold corresponding to peak SCA-ML is plotted (dashed line) to highlight association with the distribution. A small amount of noise was added to the binary outcome, to reduce point overlap masking the density of points. A logistic regression is plotted to characterize probability of toxicity.