| Literature DB >> 33304871 |
Carlos M Duarte1, Łukasz Jaremko2, Mariusz Jaremko2.
Abstract
Uniform CO2 during human evolution (180 to 280 ppm) resulted, because of the role of the CO2-bicarbonate buffer in regulating pH, in rather constant pH (7.35 to 7.45) in human fluids, cells and tissues, determining, in turn, the narrow pH range for optimal functioning of the human proteome. Herein, we hypothesize that chronic exposure to elevated pCO2 with increasing atmospheric CO2 (>400 ppm), and extended time spent in confined, crowded indoor atmospheres (pCO2 up to 5,000 ppm) with urban lifestyles, may be an important, largely overlooked driver of change in human proteome performance. The reduced pH (downregulated from 0.1 to 0.4 units below the optimum pH) of extant humans chronically exposed to elevated CO2 is likely to lead to proteome malfunction. This malfunction is due to protein misfolding, aggregation, charge distribution, and altered interaction with other molecules (e.g., nucleic acids, metals, proteins, and drugs). Such alterations would have systemic effects that help explain the prevalence of syndromes (obesity, diabetes, respiratory diseases, osteoporosis, cancer, and neurological disorders) characteristic of the modern lifestyle. Chronic exposure to elevated CO2 poses risks to human health that are too serious to be ignored and require testing with fit-for-purpose equipment and protocols along with indoor carbon capture technologies to bring CO2 levels down to approach levels (180-280 ppm) under which the human proteome evolved.Entities:
Keywords: CO2; climate-change; health; human; pH
Mesh:
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Year: 2020 PMID: 33304871 PMCID: PMC7701242 DOI: 10.3389/fpubh.2020.543322
Source DB: PubMed Journal: Front Public Health ISSN: 2296-2565
Examples of different structural and physical changes resulting in the pH sensitive functioning of the human proteome and the associated health syndromes.
| Protein folding/induced structural changes | Human Serum Albumin (HSA) | Blood | HSA exists in its neutral state at pH of about 7.35, and has been reported to experience functional changes as pH declines. | HSA is the most abundant redox agent in the blood by affecting the presence of reduced cysteine 34 (-SH). Reduced pH affects the activity and redox function of HSA through the protonation of histidine 39, altering the redox potential of cysteine 34. | Multiple metabolic dysfunctions connected with the transport of various biomolecules (e.g., free fatty acids or cholesterol, drugs and xenobiotics) through blood. In the case of certain medications, like warfarin, the altered affinity to albumin may lead to a free warfarin plasma level increase and consequently bleeding. | (S1–S3) |
| Hemoglobin | Blood | A decrease in pH below 7.4 readily reduces the affinity of hemoglobin for O2 | The pH-dependence of O2 binding to hemoglobin is a classical case of allostery, referred to as the “root effect,” leading to protonated histidine 146 that shifts deoxyhemoglobin to the T state, which has a lower affinity for oxygen (i.e., Bohr effect). | Blood acidosis, apnea, impaired intellectual abilities, and eventually, at extremely low pH compromising viability and leading to potentially lethal complications. | (S4) | |
| Carbonic Anhydrase (CA, e.g., CA XII) | Skeleton including cytosol, mitochondria and plasma membrane. | Activity increases at pH <7.4 to reach a maximum activity at pH ~7.00, and declining at lower pH. | Structural, allosteric changes of carbonic anhydrases are induced upon the reduction in pH (<7.0) with their activity being strongly altered, associated with progressive unfolding of the protein. | Removal of excess CO2 through enhanced CA activity leads to bone structures increasingly depleted in Ca2+, increasing the likelihood of osteroporosis, at pH <7.4, impacts may include possible cancer development (renal cancer, lung cancer). CAi activity has been tentatively suggested to act as a cancer transducer for | (S5–S10) | |
| Epithelial sodium channel (EnaC) | Primarily kidney nephrons, and also lung cells, testes and ovaries | As pH declines below 7.35 the ENaC gating is enhanced, leading to increased Na+ transport. | Reduced pH facilitates Na+ reabsorption across the apical membranes of epithelia in the distal nephron, respiratory and reproductive tracts, and exocrine glands. This affects water homeostasis, with the cells responding through increased polyubiquitination of β-ENaC. | These changes lead to increasing systemic ionic imbalance, affecting general homeostasis. Under acute impacts (e.g., very low pH), EnaC may interact with CFTR (Cystic Fibrosis Transmembrane conductance Regulator) possibly playing a role on cystic fibrosis. | (S5, S8, S11) | |
| Mechanistic target of rapamycin complex 1 (mTORC1) | Golgi Apparatus | rmTORC1, which has a central role in regulating many fundamental cell processes, from protein synthesis to autophagy, shows a reduced activity when pH declines below 7.4. | The effect of reduced pH on mTORC1 activity is a reversible process, but is yet to be characterized from a structural biology perspective. | Multiple health disorders can be observed when mTORC1 signaling is deregulated, including the progression of cancer and diabetes, as well as enhanced aging processes. | (S12, S13) | |
| 1-antitrypsin (1-AT) | Blood | Decreasing pH leads to a decrease in the inhibitory activity of 1-antitrypsin (1-AT). | Although the pH-dependence of protein activity is well-established, the specific impacts on the molecular structure of 1-antitrypsin (1-AT) have not yet been characterized. | Changes in molecular structure of 1-antitrypsin (1-AT) have been associated with deteriorated lung and kidney function and, specifically, idiopathic respiratory distress syndrome (IRDS) in children. | (S14–S16) | |
| Changing in binding affinity to small molecules (Ligand/drug/metal/fatty acids) | Orosomucoid (alpha1-acid glycoprotein) | Blood | pH-dependence of binding affinities of Orosomucoid toward various small organic ligands. | Reduced affinity under lowered pH has been reported for a range of tested drugs, including dipyridamole, nicardipine and imipramine. | Case of changed activity of Dipyridamole which is a medication that inhibits blood clot formation, when given chronically (or activity increases as in case of lower pH) and causes blood vessel dilation when given at high doses over a short time. | (S17) |
| Prion protein | Brain | Decreasing pH has been reported to affect the binding of histidine residues in the flexible n-terminal part of the protein as well as binding of transition metal ions (e.g., Cu2+, Zn2+). | Existing evidence suggests that, with decreasing pH, the transition from soluble PrPc to pathogenic insoluble PrPsc accelerates. Increased aggregation of prions in pathogenic forms leads to neurodegenerative processes. | Increased aggregation of prion protein in pathogenic forms PrPsc leads to neurodegenerative processes. | (S18) | |
| Phase separation (e.g., membrane-less organelles) | Nucleoporins (NUPs) transporting proteins and RNA across the nucleus membrane; proteins and/or nucleic acids that undergo membrane-less compartmentalization | All nucleus-containing human cells | Binding and translocation of proteins by NUPs is strongly pH-dependent. Whether this applies to RNA as well is still unresolved. Although the details of pH sensitivity of human proteins undergoing liquid-liquid phase separation have yet to be studied in detail, it might be expected to at least some of them by analogy to known pH-sensitive protein systems from yeast. | Binding and translocation of proteins by NUPs is strictly regulated by protein electrostatic surface, which is strongly pH-dependent. | Negative implications on cellular organization, signaling, RNA processing and transport through cellular membranes. Cell division process perturbed resulting in symptoms typical of neurodegenerative diseases as well as a likelihood of cancer development, among many other impacts. | (S19–S26) |
| Protein/DNA interactions altered | RNA-binding proteins (RBPs) | All nucleus-containing human cells | Interactions of RBPs with proteins and nucleic acids have been reported to be highly pH-dependent, within the clear-cut thresholds, as they are mainly electrostatically-driven. | RBPs are prone to mis-folding and aggregation with decreasing pH. The specific mechanism, which likely involves electrostatic changes from charge redistribution, has been examined for just a few case-studies and there is still uncertainty as to its general applicability across RBPs. | pH-dependent RBP misfunction has important metabolic implications connected to neurodegenerative diseases, and possible increases of the risk for cancer development. As RNA-binding proteins' transcriptional and post-transcriptional regulation of RNA have a role in regulating the patterns of gene expression during development, their misfunction can have systemic consequences. | (S27, S28) |
| Aggregation, surface charge distribution changes | Amylin | Langerhans isles in the pancreas | Whereas the pH ranges studied are broader than the functional range relevant for humans, there is strong evidence for pH-dependence of amylin. | Decreasing pH below 7.35 leads to the protonation of His18 and decrease of aggregation as well as formation of channels in the membrane environment. | The main consequence is the likelihood of release and subsequent aggregation of amylin, which is linked to the possibility of developing diabetes Type II. | (S29) |
| Synucleins (S) and β-amylid peptides (Abeta) | Neuronal cells | Aggregation of synucleins and β-amylid peptides (rate and/or stability of formed aggregates) has been shown to be pH-dependent. | Decreasing pH may serve as an on/off switch for βS fibrilization, and as a modulator of αS and Abeta aggregation. Moreover, pH-dependent changes in charge distribution along amino acid sequences also affect the peptides' aggregation properties. | Aggregation of synuclein and Abeta is likely conducive to neurogenerative diseases, such as Parkinson's and Alzheimer's. | (S30, S31) | |
| Transthyretin (TTR) | Blood | Decreasing pH leads to enhanced formation of aggregates. | With decreasing pH, soluble oligomers may be formed, eventually causing amyloid formation. Lowered pH might increase the improperly folded tetramer levels and shift the equilibrium toward less stable tetramers and monomers. | Unstable TTR tetramers and monomers enhance pathological amyloid or deposit formation. | (S32) | |
| Glutathione S-transferases (GSTs) | All nucleus-containing human cells | The activity of GSTs was found to be pH dependent within the range of pH of relevance. | Whereas detailed structural studies of GST with decreasing pH are lacking, the observed decline in activity is likely to involve ionization of active groups affecting the 3-D structure and dynamics of the protein. | GST is master protein accounting for as much as 10% of the proteins in the human cytosol. | (S33–S35) |
References provided in .
Figure 1(A) pCO2 levels in the atmosphere experienced throughout the evolution of mammals and humans, as well as the range of pCO2 characteristic of indoors environments and the range expected by 2,100 under different emission scenario pathways (19); (B) correspondence between different levels of ambient pCO2, and the environments where these may be encountered, and expected blood pH values and human condition.