Literature DB >> 33303323

The application of DNA polymerases and Cas9 as representative of DNA-modifying enzymes group in DNA sensor design (review).

Julija Dronina1, Urte Samukaite Bubniene2, Arunas Ramanavicius3.   

Abstract

Rapid detection of nucleic acids (DNA or RNA) by inexpensive, selective, accurate, and highly sensitive methods is very important for biosensors. DNA-sensors based on DNA-modifying enzymes for fast determination and monitoring of pathogenic (Zika, Dengue, SARS-Cov-2 (inducer of COVID-19), human papillomavirus, HIV, etc.) viruses and diagnosis of virus-induced diseases is a key factor of this overview. Recently, DNA-modifying enzymes (Taq DNA polymerase, Phi29 DNA polymerase) have been widely used for the diagnosis of virus or pathogenic disease by gold standard (PCR, qPCR, RT-qPCR) methods, therefore, alternative methods have been reviewed. The main mechanisms of DNA metabolism (replication cycle, amplification) and the genomeediting tool CRISPR-Cas9 are purposefully discussed in order to address strategic possibility to design DNA-sensors based on immobilized DNA-enzymes. However, the immobilization of biologically active proteins on a gold carrier technique with the ability to detect viral or bacterial nucleic acids is individual for each DNA-modifying enzyme group, due to a different number of active sites, C and N terminal locations and arrangement, therefore, individual protocols based on the 'masking' of active sites should be elaborated for each enzyme.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Biosensors; COVID-19; CRISPR-Cas9; DNA polymerases; DNA-Sensors; Gold nanoparticles

Year:  2020        PMID: 33303323     DOI: 10.1016/j.bios.2020.112867

Source DB:  PubMed          Journal:  Biosens Bioelectron        ISSN: 0956-5663            Impact factor:   10.618


  11 in total

1.  The CRISPR-Cas system as a tool for diagnosing and treating infectious diseases.

Authors:  Juan Lou; Bin Wang; Junwei Li; Peng Ni; Yuefei Jin; Shuaiyin Chen; Yuanlin Xi; Rongguang Zhang; Guangcai Duan
Journal:  Mol Biol Rep       Date:  2022-07-20       Impact factor: 2.742

2.  Development of amperometric biosensor based on cloned hemagglutinin gene of H1N1 (swine flu) virus.

Authors:  Paramjeet Singh Gill; Jagriti Narang; Ashok Kumar; Hari Mohan
Journal:  3 Biotech       Date:  2022-06-01       Impact factor: 2.893

3.  New Acaciin-Loaded Self-Assembled Nanofibers as MPro Inhibitors Against BCV as a Surrogate Model for SARS-CoV-2.

Authors:  Soad A Mohamad; Eman Maher Zahran; Maha Raafat Abdel Fadeel; Amgad Albohy; Mohamed A Safwat
Journal:  Int J Nanomedicine       Date:  2021-03-02

4.  Fluorescence polarization system for rapid COVID-19 diagnosis.

Authors:  Chang Yeol Lee; Ismail Degani; Jiyong Cheong; Jae-Hyun Lee; Hyun-Jung Choi; Jinwoo Cheon; Hakho Lee
Journal:  Biosens Bioelectron       Date:  2021-01-30       Impact factor: 12.545

Review 5.  Noble Metal Nanomaterial-Based Biosensors for Electrochemical and Optical Detection of Viruses Causing Respiratory Illnesses.

Authors:  Hye Kyu Choi; Myeong-Jun Lee; Sang Nam Lee; Tae-Hyung Kim; Byung-Keun Oh
Journal:  Front Chem       Date:  2021-05-13       Impact factor: 5.221

Review 6.  Advances and insights in the diagnosis of viral infections.

Authors:  Julija Dronina; Urte Samukaite-Bubniene; Arunas Ramanavicius
Journal:  J Nanobiotechnology       Date:  2021-10-30       Impact factor: 10.435

7.  Electrochemical detection of ACE2 as a biomarker for diagnosis of COVID-19 and potential male infertility.

Authors:  Shuai Liu; Liping Han; Jinlong Li; Hao Li
Journal:  Biosens Bioelectron       Date:  2021-11-19       Impact factor: 12.545

8.  A one-step, one-pot CRISPR nucleic acid detection platform (CRISPR-top): Application for the diagnosis of COVID-19.

Authors:  Shijun Li; Junfei Huang; Lijuan Ren; Weijia Jiang; Ming Wang; Li Zhuang; Qinni Zheng; Rui Yang; Yi Zeng; Laurence Don Wai Luu; Yi Wang; Jun Tai
Journal:  Talanta       Date:  2021-06-12       Impact factor: 6.057

Review 9.  Towards application of CRISPR-Cas12a in the design of modern viral DNA detection tools (Review).

Authors:  Julija Dronina; Urte Samukaite-Bubniene; Arunas Ramanavicius
Journal:  J Nanobiotechnology       Date:  2022-01-21       Impact factor: 10.435

Review 10.  Biosensors for the Determination of SARS-CoV-2 Virus and Diagnosis of COVID-19 Infection.

Authors:  Maryia Drobysh; Almira Ramanaviciene; Roman Viter; Chien-Fu Chen; Urte Samukaite-Bubniene; Vilma Ratautaite; Arunas Ramanavicius
Journal:  Int J Mol Sci       Date:  2022-01-08       Impact factor: 5.923

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