Literature DB >> 33303320

G-Quadruplexes in RNA Biology: Recent Advances and Future Directions.

Leïla Dumas1, Pauline Herviou1, Erik Dassi2, Anne Cammas1, Stefania Millevoi3.   

Abstract

RNA G-quadruplexes (RG4s) are four-stranded structures known to control gene expression mechanisms, from transcription to protein synthesis, and DNA-related processes. Their potential impact on RNA biology allows these structures to shape cellular processes relevant to disease development, making their targeting for therapeutic purposes an attractive option. We review here the current knowledge on RG4s, focusing on the latest breakthroughs supporting the notion of transient structures that fluctuate dynamically in cellulo, their interplay with RNA modifications, their role in cell compartmentalization, and their deregulation impacting the host immune response. We emphasize RG4-binding proteins as determinants of their transient conformation and effectors of their biological functions.
Copyright © 2020 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  RNA G-quadruplexes; RNA modifications; RNA-binding proteins; immune escape; liquid–liquid phase separation; mitochondria

Year:  2020        PMID: 33303320     DOI: 10.1016/j.tibs.2020.11.001

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  24 in total

1.  Hidden intermediates in Mango III RNA aptamer folding revealed by pressure perturbation.

Authors:  Balasubramanian Harish; Jinqiu Wang; Eric J Hayden; Bastian Grabe; Wolf Hiller; Roland Winter; Catherine A Royer
Journal:  Biophys J       Date:  2021-12-28       Impact factor: 4.033

2.  HNRNPH1 destabilizes the G-quadruplex structures formed by G-rich RNA sequences that regulate the alternative splicing of an oncogenic fusion transcript.

Authors:  Tam Vo; Tayvia Brownmiller; Katherine Hall; Tamara L Jones; Sulbha Choudhari; Ioannis Grammatikakis; Katelyn R Ludwig; Natasha J Caplen
Journal:  Nucleic Acids Res       Date:  2022-06-24       Impact factor: 19.160

3.  Binding Properties of RNA Quadruplex of SARS-CoV-2 to Berberine Compared to Telomeric DNA Quadruplex.

Authors:  Rosario Oliva; Sanjib Mukherjee; Magiliny Manisegaran; Marco Campanile; Pompea Del Vecchio; Luigi Petraccone; Roland Winter
Journal:  Int J Mol Sci       Date:  2022-05-19       Impact factor: 6.208

Review 4.  Recent advances in RNA structurome.

Authors:  Bingbing Xu; Yanda Zhu; Changchang Cao; Hao Chen; Qiongli Jin; Guangnan Li; Junfeng Ma; Siwy Ling Yang; Jieyu Zhao; Jianghui Zhu; Yiliang Ding; Xianyang Fang; Yongfeng Jin; Chun Kit Kwok; Aiming Ren; Yue Wan; Zhiye Wang; Yuanchao Xue; Huakun Zhang; Qiangfeng Cliff Zhang; Yu Zhou
Journal:  Sci China Life Sci       Date:  2022-06-14       Impact factor: 10.372

5.  Evaluating the Influence of a G-Quadruplex Prone Sequence on the Transactivation Potential by Wild-Type and/or Mutant P53 Family Proteins through a Yeast-Based Functional Assay.

Authors:  Paola Monti; Vaclav Brazda; Natália Bohálová; Otília Porubiaková; Paola Menichini; Andrea Speciale; Renata Bocciardi; Alberto Inga; Gilberto Fronza
Journal:  Genes (Basel)       Date:  2021-02-15       Impact factor: 4.096

6.  Biological relevance and therapeutic potential of G-quadruplex structures in the human noncoding transcriptome.

Authors:  Martina Tassinari; Sara N Richter; Paolo Gandellini
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

7.  SARS-CoV-2 Nsp3 unique domain SUD interacts with guanine quadruplexes and G4-ligands inhibit this interaction.

Authors:  Marc Lavigne; Olivier Helynck; Pascal Rigolet; Rofia Boudria-Souilah; Mireille Nowakowski; Bruno Baron; Sébastien Brülé; Sylviane Hoos; Bertrand Raynal; Lionel Guittat; Claire Beauvineau; Stéphane Petres; Anton Granzhan; Jean Guillon; Geneviève Pratviel; Marie-Paule Teulade-Fichou; Patrick England; Jean-Louis Mergny; Hélène Munier-Lehmann
Journal:  Nucleic Acids Res       Date:  2021-07-21       Impact factor: 16.971

Review 8.  On the Road to Fight Cancer: The Potential of G-quadruplex Ligands as Novel Therapeutic Agents.

Authors:  Irene Alessandrini; Marta Recagni; Nadia Zaffaroni; Marco Folini
Journal:  Int J Mol Sci       Date:  2021-05-31       Impact factor: 5.923

9.  Lipid membranes modulate the activity of RNA through sequence-dependent interactions.

Authors:  Tomasz Czerniak; James P Saenz
Journal:  Proc Natl Acad Sci U S A       Date:  2022-01-25       Impact factor: 11.205

10.  Activation of the integrated stress response confers vulnerability to mitoribosome-targeting antibiotics in melanoma.

Authors:  Jean-Christophe Marine; Eleonora Leucci; Roberto Vendramin; Vicky Katopodi; Sonia Cinque; Angelina Konnova; Zorica Knezevic; Sara Adnane; Yvessa Verheyden; Panagiotis Karras; Ewout Demesmaeker; Francesca M Bosisio; Lukas Kucera; Jan Rozman; Ivan Gladwyn-Ng; Lara Rizzotto; Erik Dassi; Stefania Millevoi; Oliver Bechter
Journal:  J Exp Med       Date:  2021-07-21       Impact factor: 14.307

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