Literature DB >> 33301125

Context-Specific and Proximity-Dependent Labeling for the Proteomic Analysis of Spatiotemporally Defined Protein Complexes with Split-BioID.

Cinthia Amaya Ramirez1,2, Stefanie Egetemaier1,2, Julien Béthune3,4,5.   

Abstract

Proximity-dependent labeling techniques such as BioID and APEX2 allow the biotinylation of proteins proximal to a protein of interest in living cells. Following streptavidin pulldown and mass spectrometry analysis, this enables the identification of native protein-protein interactions. Here we describe split-BioID, a protein-fragment complementation assay that increases the resolution of BioID. Using this technique, context-specific protein complexes can be resolved.

Entities:  

Keywords:  BioID; Biotin; Protein-fragment complementation assay; Protein–protein interactions; Proteomics

Mesh：

Substances：

Year:  2021        PMID： 33301125     DOI： 10.1007/978-1-0716-1126-5_17

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  12 in total

1.  Split-BioID: a proximity biotinylation assay for dimerization-dependent protein interactions.

Authors:  Sofie De Munter; Janina Görnemann; Rita Derua; Bart Lesage; Junbin Qian; Ewald Heroes; Etienne Waelkens; Aleyde Van Eynde; Monique Beullens; Mathieu Bollen
Journal:  FEBS Lett       Date:  2017-01-12       Impact factor: 4.124

2.  Probing nuclear pore complex architecture with proximity-dependent biotinylation.

Authors:  Dae In Kim; K C Birendra; Wenhong Zhu; Khatereh Motamedchaboki; Valérie Doye; Kyle J Roux
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-03       Impact factor: 11.205

Review 3.  Small molecules, big targets: drug discovery faces the protein-protein interaction challenge.

Authors:  Duncan E Scott; Andrew R Bayly; Chris Abell; John Skidmore
Journal:  Nat Rev Drug Discov       Date:  2016-04-11       Impact factor: 84.694

4.  Novel bilobe components in Trypanosoma brucei identified using proximity-dependent biotinylation.

Authors:  Brooke Morriswood; Katharina Havlicek; Lars Demmel; Sevil Yavuz; Marco Sealey-Cardona; Keni Vidilaseris; Dorothea Anrather; Julius Kostan; Kristina Djinovic-Carugo; Kyle J Roux; Graham Warren
Journal:  Eukaryot Cell       Date:  2012-12-21

5.  BioSITe: A Method for Direct Detection and Quantitation of Site-Specific Biotinylation.

Authors:  Dae In Kim; Jevon A Cutler; Chan Hyun Na; Sina Reckel; Santosh Renuse; Anil K Madugundu; Raiha Tahir; Hana L Goldschmidt; Karen L Reddy; Richard L Huganir; Xinyan Wu; Natasha E Zachara; Oliver Hantschel; Akhilesh Pandey
Journal:  J Proteome Res       Date:  2017-12-28       Impact factor: 4.466

6.  Capturing the Asc1p/Receptor for Activated C Kinase 1 (RACK1) Microenvironment at the Head Region of the 40S Ribosome with Quantitative BioID in Yeast.

Authors:  Nadine Opitz; Kerstin Schmitt; Verena Hofer-Pretz; Bettina Neumann; Heike Krebber; Gerhard H Braus; Oliver Valerius
Journal:  Mol Cell Proteomics       Date:  2017-10-05       Impact factor: 5.911

7.  A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells.

Authors:  Kyle J Roux; Dae In Kim; Manfred Raida; Brian Burke
Journal:  J Cell Biol       Date:  2012-03-12       Impact factor: 10.539

8.  Directed evolution of APEX2 for electron microscopy and proximity labeling.

Authors:  Stephanie S Lam; Jeffrey D Martell; Kimberli J Kamer; Thomas J Deerinck; Mark H Ellisman; Vamsi K Mootha; Alice Y Ting
Journal:  Nat Methods       Date:  2014-11-24       Impact factor: 28.547

9.  Split-BioID a conditional proteomics approach to monitor the composition of spatiotemporally defined protein complexes.

Authors:  Isabel Myriam Schopp; Cinthia Claudia Amaya Ramirez; Jerneja Debeljak; Elisa Kreibich; Merle Skribbe; Klemens Wild; Julien Béthune
Journal:  Nat Commun       Date:  2017-06-06       Impact factor: 14.919

10.  An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of protein interactions and subcellular localizations.

Authors:  Xiaonan Liu; Kari Salokas; Fitsum Tamene; Yaming Jiu; Rigbe G Weldatsadik; Tiina Öhman; Markku Varjosalo
Journal:  Nat Commun       Date:  2018-03-22       Impact factor: 14.919
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  1 in total

1.  Engineering of ultraID, a compact and hyperactive enzyme for proximity-dependent biotinylation in living cells.

Authors:  Lea Kubitz; Sebastian Bitsch; Xiyan Zhao; Kerstin Schmitt; Lukas Deweid; Amélie Roehrig; Elisa Cappio Barazzone; Oliver Valerius; Harald Kolmar; Julien Béthune
Journal:  Commun Biol       Date:  2022-07-04
  1 in total

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