Literature DB >> 33289895

Alignment of Biological Sequences with Jalview.

James B Procter1, G Mungo Carstairs2, Ben Soares2, Kira Mourão2,3, T Charles Ofoegbu2,4, Daniel Barton2,5, Lauren Lui2,6, Anne Menard7, Natasha Sherstnev2,8, David Roldan-Martinez4,9, Suzanne Duce2, David M A Martin2, Geoffrey J Barton2.   

Abstract

In this chapter, we introduce core functionality of the Jalview interactive platform for the creation, analysis, and publication of multiple sequence alignments. A workflow is described based on Jalview's core functions: from data import to figure generation, including import of alignment reliability scores from T-Coffee and use of Jalview from the command line. The accompanying notes provide background information on the underlying methods and discuss additional options for working with Jalview to perform multiple sequence alignment, functional site analysis, and publication of alignments on the web.

Entities:  

Keywords:  Desktop application; Functional site inference; Interactive analysis; Multiple sequence alignment visualization; Web application; Web services

Mesh：

Year:  2021        PMID： 33289895      PMCID： PMC7116599          DOI： 10.1007/978-1-0716-1036-7_13

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


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