Literature DB >> 33652738

Structural Insights into Carboxylic Polyester-Degrading Enzymes and Their Functional Depolymerizing Neighbors.

Ana Lúcia Leitão1, Francisco J Enguita2.   

Abstract

Esters are organic compounds widely represented in cellular structures and metabolism, originated by the condensation of organic acids and alcohols. Esterification reactions are also used by chemical industries for the production of synthetic plastic polymers. Polyester plastics are an increasing source of environmental pollution due to their intrinsic stability and limited recycling efforts. Bioremediation of polyesters based on the use of specific microbial enzymes is an interesting alternative to the current methods for the valorization of used plastics. Microbial esterases are promising catalysts for the biodegradation of polyesters that can be engineered to improve their biochemical properties. In this work, we analyzed the structure-activity relationships in microbial esterases, with special focus on the recently described plastic-degrading enzymes isolated from marine microorganisms and their structural homologs. Our analysis, based on structure-alignment, molecular docking, coevolution of amino acids and surface electrostatics determined the specific characteristics of some polyester hydrolases that could be related with their efficiency in the degradation of aromatic polyesters, such as phthalates.

Entities:  

Keywords:  PETase; biodegradation; depolymerizing esterase; esterase; plastic polymer; polyester

Mesh:

Substances:

Year:  2021        PMID: 33652738      PMCID: PMC7956259          DOI: 10.3390/ijms22052332

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  54 in total

1.  Evolution of a Catalytic Mechanism.

Authors:  Alissa Rauwerdink; Mark Lunzer; Titu Devamani; Bryan Jones; Joanna Mooney; Zhi-Jun Zhang; Jian-He Xu; Romas J Kazlauskas; Antony M Dean
Journal:  Mol Biol Evol       Date:  2015-12-16       Impact factor: 16.240

2.  Structural basis for the Ca(2+)-enhanced thermostability and activity of PET-degrading cutinase-like enzyme from Saccharomonospora viridis AHK190.

Authors:  Takuya Miyakawa; Hiroki Mizushima; Jun Ohtsuka; Masayuki Oda; Fusako Kawai; Masaru Tanokura
Journal:  Appl Microbiol Biotechnol       Date:  2014-12-11       Impact factor: 4.813

3.  Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca2+-Driven Catalytic Cycle.

Authors:  Nobutaka Numoto; Narutoshi Kamiya; Gert-Jan Bekker; Yuri Yamagami; Satomi Inaba; Kentaro Ishii; Susumu Uchiyama; Fusako Kawai; Nobutoshi Ito; Masayuki Oda
Journal:  Biochemistry       Date:  2018-08-27       Impact factor: 3.162

4.  Mustguseal: a server for multiple structure-guided sequence alignment of protein families.

Authors:  Dmitry A Suplatov; Kirill E Kopylov; Nina N Popova; Vladimir V Voevodin; Vytas K Švedas
Journal:  Bioinformatics       Date:  2018-05-01       Impact factor: 6.937

5.  The Protein Imager: a full-featured online molecular viewer interface with server-side HQ-rendering capabilities.

Authors:  Gianluca Tomasello; Ilaria Armenia; Gianluca Molla
Journal:  Bioinformatics       Date:  2020-05-01       Impact factor: 6.937

6.  Isolation of a novel cutinase homolog with polyethylene terephthalate-degrading activity from leaf-branch compost by using a metagenomic approach.

Authors:  Sintawee Sulaiman; Saya Yamato; Eiko Kanaya; Joong-Jae Kim; Yuichi Koga; Kazufumi Takano; Shigenori Kanaya
Journal:  Appl Environ Microbiol       Date:  2011-12-22       Impact factor: 4.792

7.  Structural bioinformatics-based protein engineering of thermo-stable PETase from Ideonella sakaiensis.

Authors:  Hyeoncheol Francis Son; Seongjoon Joo; Hogyun Seo; Hye-Young Sagong; Seul Hoo Lee; Hwaseok Hong; Kyung-Jin Kim
Journal:  Enzyme Microb Technol       Date:  2020-09-03       Impact factor: 3.493

8.  Ideonella sakaiensis sp. nov., isolated from a microbial consortium that degrades poly(ethylene terephthalate).

Authors:  Somboon Tanasupawat; Toshihiko Takehana; Shosuke Yoshida; Kazumi Hiraga; Kohei Oda
Journal:  Int J Syst Evol Microbiol       Date:  2016-04-05       Impact factor: 2.747

9.  Structure of the plastic-degrading Ideonella sakaiensis MHETase bound to a substrate.

Authors:  Gottfried J Palm; Lukas Reisky; Dominique Böttcher; Henrik Müller; Emil A P Michels; Miriam C Walczak; Leona Berndt; Manfred S Weiss; Uwe T Bornscheuer; Gert Weber
Journal:  Nat Commun       Date:  2019-04-12       Impact factor: 14.919

10.  Phylogenetic Distribution of Plastic-Degrading Microorganisms.

Authors:  Victor Gambarini; Olga Pantos; Joanne M Kingsbury; Louise Weaver; Kim M Handley; Gavin Lear
Journal:  mSystems       Date:  2021-01-19       Impact factor: 6.496

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  2 in total

1.  An Efficient Protein Evolution Workflow for the Improvement of Bacterial PET Hydrolyzing Enzymes.

Authors:  Valentina Pirillo; Marco Orlando; Davide Tessaro; Loredano Pollegioni; Gianluca Molla
Journal:  Int J Mol Sci       Date:  2021-12-27       Impact factor: 5.923

2.  Evidence that nuclear receptors are related to terpene synthases.

Authors:  Douglas R Houston; Jane G Hanna; J Constance Lathe; Stephen G Hillier; Richard Lathe
Journal:  J Mol Endocrinol       Date:  2022-03-14       Impact factor: 5.098

  2 in total

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