Literature DB >> 33289792

The PEP-pyruvate-oxaloacetate node: variation at the heart of metabolism.

Jeroen G Koendjbiharie1, Richard van Kranenburg1,2, Servé W M Kengen1.   

Abstract

At the junction between the glycolysis and the tricarboxylic acid cycle-as well as various other metabolic pathways-lies the phosphoenolpyruvate (PEP)-pyruvate-oxaloacetate node (PPO-node). These three metabolites form the core of a network involving at least eleven different types of enzymes, each with numerous subtypes. Obviously, no single organism maintains each of these eleven enzymes; instead, different organisms possess different subsets in their PPO-node, which results in a remarkable degree of variation, despite connecting such deeply conserved metabolic pathways as the glycolysis and the tricarboxylic acid cycle. The PPO-node enzymes play a crucial role in cellular energetics, with most of them involved in (de)phosphorylation of nucleotide phosphates, while those responsible for malate conversion are important redox enzymes. Variations in PPO-node therefore reflect the different energetic niches that organisms can occupy. In this review, we give an overview of the biochemistry of these eleven PPO-node enzymes. We attempt to highlight the variation that exists, both in PPO-node compositions, as well as in the roles that the enzymes can have within those different settings, through various recent discoveries in both bacteria and archaea that reveal deviations from canonical functions.
© The Author(s) 2020. Published by Oxford University Press on behalf of FEMS.

Entities:  

Keywords:  PPO-node; central metabolism; enzyme biochemistry; oxaloacetate; phosphoenolpyruvate; pyruvate

Year:  2021        PMID: 33289792      PMCID: PMC8100219          DOI: 10.1093/femsre/fuaa061

Source DB:  PubMed          Journal:  FEMS Microbiol Rev        ISSN: 0168-6445            Impact factor:   16.408


  193 in total

1.  An AMP-dependent (ATP-forming) kinase in the hyperthermophilic archaeon Pyrococcus furiosus: characterization and novel physiological role.

Authors:  H Sakuraba; E Utsumi; C Kujo; T Ohshima
Journal:  Arch Biochem Biophys       Date:  1999-04-01       Impact factor: 4.013

Review 2.  Succinate production in Escherichia coli.

Authors:  Chandresh Thakker; Irene Martínez; Ka-Yiu San; George N Bennett
Journal:  Biotechnol J       Date:  2011-09-20       Impact factor: 4.677

3.  Purification and regulatory properties of the oxaloacetate decarboxylase of Acetobacter xylinum.

Authors:  M Benziman; A Russo; S Hochman; H Weinhouse
Journal:  J Bacteriol       Date:  1978-04       Impact factor: 3.490

4.  Glucose-6-phosphate-dependent pyruvate kinase in Streptococcus mutans.

Authors:  T Yamada; J Carlsson
Journal:  J Bacteriol       Date:  1975-10       Impact factor: 3.490

5.  Atypical glycolysis in Clostridium thermocellum.

Authors:  Jilai Zhou; Daniel G Olson; D Aaron Argyros; Yu Deng; Walter M van Gulik; Johannes P van Dijken; Lee R Lynd
Journal:  Appl Environ Microbiol       Date:  2013-02-22       Impact factor: 4.792

6.  Molecular and regulatory properties of leucoplast pyruvate kinase from Brassica napus (rapeseed) suspension cells.

Authors:  William C Plaxton; Christopher R Smith; Vicki L Knowles
Journal:  Arch Biochem Biophys       Date:  2002-04-01       Impact factor: 4.013

7.  Purification and characterization of phosphoenolpyruvate carboxykinase from the anaerobic ruminal bacterium Ruminococcus flavefaciens.

Authors:  L Schöcke; P J Weimer
Journal:  Arch Microbiol       Date:  1997-05       Impact factor: 2.552

8.  Expression of cold-tolerant pyruvate, orthophosphate dikinase cDNA, and heterotetramer formation in transgenic maize plants.

Authors:  Shozo Ohta; Yuji Ishida; Satoru Usami
Journal:  Transgenic Res       Date:  2004-10       Impact factor: 2.788

9.  The physiology and habitat of the last universal common ancestor.

Authors:  Madeline C Weiss; Filipa L Sousa; Natalia Mrnjavac; Sinje Neukirchen; Mayo Roettger; Shijulal Nelson-Sathi; William F Martin
Journal:  Nat Microbiol       Date:  2016-07-25       Impact factor: 17.745

10.  Structural insights into sodium transport by the oxaloacetate decarboxylase sodium pump.

Authors:  Xin Xu; Huigang Shi; Xiaowen Gong; Pu Chen; Ying Gao; Xinzheng Zhang; Song Xiang
Journal:  Elife       Date:  2020-05-27       Impact factor: 8.140

View more
  1 in total

1.  4D genetic networks reveal the genetic basis of metabolites and seed oil-related traits in 398 soybean RILs.

Authors:  Xu Han; Ya-Wen Zhang; Jin-Yang Liu; Jian-Fang Zuo; Ze-Chang Zhang; Liang Guo; Yuan-Ming Zhang
Journal:  Biotechnol Biofuels Bioprod       Date:  2022-09-09
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.