Literature DB >> 33289700

SNRPB-mediated RNA splicing drives tumor cell proliferation and stemness in hepatocellular carcinoma.

Yu-Ting Zhan1, Lei Li1,2, Ting-Ting Zeng1, Ning-Ning Zhou1, Xin-Yuan Guan1,2, Yan Li1.   

Abstract

Hepatocellular carcinoma (HCC) is one of the leading malignant diseases worldwide, but therapeutic targets for HCC are lacking. Here, we characterized a significant upregulation of Small Nuclear Ribonucleoprotein Polypeptides B and B1 (SNRPB) in HCC via qRT-PCR, western blotting, tissue microarray and public database analyses. Increased SNRPB expression was positively associated with adjacent organ invasion, tumor size, serum AFP level and poor HCC patient survival. Next, we transfected SNRPB into HCC cells to construct SNRPB-overexpressing cell lines, and short hairpin RNA targeting SNRPB was used to silence SNRPB in HCC cells. Functional studies showed that SNRPB overexpression could promote HCC cell malignant proliferation and stemness maintenance. Inversely, SNRPB knockdown in HCC cells caused inverse effects. Importantly, analysis of alternative splicing by RNA sequencing revealed that SNRPB promoted the formation of AKT3-204 and LDHA-220 splice variants, which activated the Akt pathway and aerobic glycolysis in HCC cells. In conclusion, SNRPB could serve as a prognostic predictor for patients with HCC, and it promotes HCC progression by inducing metabolic reprogramming.

Entities:  

Keywords:  RNA splicing; SNRPB; cancer stem cell; glycolysis; hepatocellular carcinoma

Mesh:

Substances:

Year:  2020        PMID: 33289700      PMCID: PMC7834993          DOI: 10.18632/aging.202164

Source DB:  PubMed          Journal:  Aging (Albany NY)        ISSN: 1945-4589            Impact factor:   5.682


  45 in total

1.  Astrocyte elevated gene-1 and c-Myc cooperate to promote hepatocarcinogenesis in mice.

Authors:  Jyoti Srivastava; Ayesha Siddiq; Rachel Gredler; Xue-Ning Shen; Devaraja Rajasekaran; Chadia L Robertson; Mark A Subler; Jolene J Windle; Catherine I Dumur; Nitai D Mukhopadhyay; Dawn Garcia; Zhao Lai; Yidong Chen; Uthra Balaji; Paul B Fisher; Devanand Sarkar
Journal:  Hepatology       Date:  2015-01-23       Impact factor: 17.425

Review 2.  Context-dependent control of alternative splicing by RNA-binding proteins.

Authors:  Xiang-Dong Fu; Manuel Ares
Journal:  Nat Rev Genet       Date:  2014-08-12       Impact factor: 53.242

3.  Lupus autoantibodies recognize the product of an alternative open reading frame of SmB/B'.

Authors:  K M Kaufman; M Y Kirby; M T McClain; J B Harley; J A James
Journal:  Biochem Biophys Res Commun       Date:  2001-08-03       Impact factor: 3.575

4.  c-Myc-mediated SNRPB upregulation functions as an oncogene in hepatocellular carcinoma.

Authors:  Ningfu Peng; Jindu Li; Jingrong He; Xianmao Shi; Hao Huang; Yishuai Mo; Hang Ye; Guobin Wu; Feixiang Wu; Bangde Xiang; Jianhong Zhong; Lequn Li; Shaoliang Zhu
Journal:  Cell Biol Int       Date:  2020-01-22       Impact factor: 3.612

5.  Expansion of cancer stem cell pool initiates lung cancer recurrence before angiogenesis.

Authors:  Lei Li; Jiang-Chao Li; Hong Yang; Xu Zhang; Lu-Lu Liu; Yan Li; Ting-Ting Zeng; Ying-Hui Zhu; Xiao-Dong Li; Yan Li; Dan Xie; Li Fu; Xin-Yuan Guan
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-29       Impact factor: 11.205

Review 6.  Alternative splicing, RNA-seq and drug discovery.

Authors:  Shanrong Zhao
Journal:  Drug Discov Today       Date:  2019-04-04       Impact factor: 7.851

7.  Mutations in SNRPB, encoding components of the core splicing machinery, cause cerebro-costo-mandibular syndrome.

Authors:  Séverine Bacrot; Mathilde Doyard; Céline Huber; Olivier Alibeu; Niklas Feldhahn; Daphné Lehalle; Didier Lacombe; Sandrine Marlin; Patrick Nitschke; Florence Petit; Marie-Paule Vazquez; Arnold Munnich; Valérie Cormier-Daire
Journal:  Hum Mutat       Date:  2014-12-11       Impact factor: 4.878

8.  NCBI GEO: archive for functional genomics data sets--update.

Authors:  Tanya Barrett; Stephen E Wilhite; Pierre Ledoux; Carlos Evangelista; Irene F Kim; Maxim Tomashevsky; Kimberly A Marshall; Katherine H Phillippy; Patti M Sherman; Michelle Holko; Andrey Yefanov; Hyeseung Lee; Naigong Zhang; Cynthia L Robertson; Nadezhda Serova; Sean Davis; Alexandra Soboleva
Journal:  Nucleic Acids Res       Date:  2012-11-27       Impact factor: 16.971

9.  GEPIA: a web server for cancer and normal gene expression profiling and interactive analyses.

Authors:  Zefang Tang; Chenwei Li; Boxi Kang; Ge Gao; Cheng Li; Zemin Zhang
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

Review 10.  Unappreciated Role of LDHA and LDHB to Control Apoptosis and Autophagy in Tumor Cells.

Authors:  Kaja Urbańska; Arkadiusz Orzechowski
Journal:  Int J Mol Sci       Date:  2019-04-27       Impact factor: 5.923

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  12 in total

1.  Overexpressed SNRPB/D1/D3/E/F/G correlate with poor survival and immune infiltration in hepatocellular carcinoma.

Authors:  Fu-Ping Li; Gao-Hua Liu; Xue-Qin Zhang; Wei-Jie Kong; Jian Mei; Mao Wang; Yin-Hai Dai
Journal:  Am J Transl Res       Date:  2022-06-15       Impact factor: 3.940

2.  Comprehensive analysis of spliceosome genes and their mutants across 27 cancer types in 9070 patients: clinically relevant outcomes in the context of 3P medicine.

Authors:  Zhen Ye; Aiying Bing; Shulian Zhao; Shuying Yi; Xianquan Zhan
Journal:  EPMA J       Date:  2022-05-10       Impact factor: 8.836

3.  Comprehensive analysis of expression profiles and prognosis of TRIM genes in human kidney clear cell carcinoma.

Authors:  Junwen Shen; Rongjiang Wang; Yu Chen; Zhihai Fang; Jianer Tang; Jianxiang Yao; Jianguo Gao; Wenxia Zhou; Xiongnong Chen
Journal:  Aging (Albany NY)       Date:  2022-05-26       Impact factor: 5.955

4.  Suppression of Heterogeneous Nuclear Ribonucleoprotein C Inhibit Hepatocellular Carcinoma Proliferation, Migration, and Invasion via Ras/MAPK Signaling Pathway.

Authors:  Jiejun Hu; Dong Cai; Zhibo Zhao; Guo-Chao Zhong; Jianping Gong
Journal:  Front Oncol       Date:  2021-04-16       Impact factor: 6.244

5.  Expression and Clinical Significance of MPS-1 in Hepatocellular Carcinoma.

Authors:  He Jiang; Feifei Yuan; Zhiying Zhao; Tongchun Xue; Ningling Ge; Zhenggang Ren; Lan Zhang
Journal:  Int J Gen Med       Date:  2021-12-01

6.  The diagnostic and prognostic significance of small nuclear ribonucleoprotein Sm D1 aberrantly high expression in hepatocellular carcinoma.

Authors:  Huaxiang Wang; Fengfeng Xu; Lingling Lu; Fang Yang; Xinghua Huang; Lizhi Lv; Huanzhang Hu; Yi Jiang
Journal:  J Cancer       Date:  2022-01-01       Impact factor: 4.207

7.  lncRNA RUNDC3A-AS1 Regulates Proliferation and Apoptosis of Thyroid Cancer Cells via the miR-151b/SNRPB Axis.

Authors:  Yan Deng; Jie Wu; Xin Li
Journal:  Int J Endocrinol       Date:  2022-02-22       Impact factor: 3.257

8.  Novel Gene Signatures as Prognostic Biomarkers for Predicting the Recurrence of Hepatocellular Carcinoma.

Authors:  Ju A Son; Hye Ri Ahn; Donglim You; Geum Ok Baek; Moon Gyong Yoon; Jung Hwan Yoon; Hyo Jung Cho; Soon Sun Kim; Suk Woo Nam; Jung Woo Eun; Jae Youn Cheong
Journal:  Cancers (Basel)       Date:  2022-02-09       Impact factor: 6.639

9.  Overexpression of chaperonin containing TCP1 subunit 7 has diagnostic and prognostic value for hepatocellular carcinoma.

Authors:  Xinghua Huang; Huaxiang Wang; Fengfeng Xu; Lizhi Lv; Ruling Wang; Bin Jiang; Tingting Liu; Huanzhang Hu; Yi Jiang
Journal:  Aging (Albany NY)       Date:  2022-01-24       Impact factor: 5.955

10.  SNRPD1/E/F/G Serve as Potential Prognostic Biomarkers in Lung Adenocarcinoma.

Authors:  Gaohua Liu; Fuping Li; Meichun Chen; Yang Luo; Yinhai Dai; Peifeng Hou
Journal:  Front Genet       Date:  2022-03-03       Impact factor: 4.599

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