| Literature DB >> 33282701 |
Ola Wagih Hegab1, Eman F Abdel-Latif1, Ashraf Ahmed Moawad1.
Abstract
Background: Soft and hard artisanal cheeses are regularly consumed in Egypt. These products are usually processed from raw milk which may harbor many pathogenic and spoilage microorganisms. Aim: To evaluate the safety of some artisanal cheeses in Egypt, such as Ras, Domiati, and Mish, through chemical and microbiological examination.Entities:
Keywords: Domiati; E. coli virulence genes; Mish; Ras; S. aureus enterotoxins
Year: 2020 PMID: 33282701 PMCID: PMC7703607 DOI: 10.4314/ovj.v10i3.8
Source DB: PubMed Journal: Open Vet J ISSN: 2218-6050
Oligonucleotide primers’ sequences and PCR conditions.
| Target agent | Length of amplified product | Primer sequence (5’-3’) | Gene | Reference |
|---|---|---|---|---|
| S. aureus | 102 bp | GGTTATCAATGTGCGGGTGG | sea |
|
| CGGCACTTTTTTCTCTTCGG | ||||
| 278 bp | CCAATAATAGGAGAAAATAAAAG | sed | ||
| ATTGGTATTTTTTTTCGTTC | ||||
| 209 bp | AGGTTTTTTCACAGGTCATCC | see | ||
| CTTTTTTTTCTTCGGTCAATC | ||||
| 164 bp | GTATGGTGGTGTAACTGAGC | seb | ||
| CCAAATAGTGACGAGTTAGG | ||||
| 451 bp | AGATGAAGTAGTTGATGTGTATGG | sec | ||
| CACACTTTTAGAATCAACCG | ||||
| Primary denaturation: 94°C/5 minutes; secondary denaturation: 94°C/30 seconds; annealing: 57°C/40 seconds; extension: 72°C/45 seconds; No. of cycles: 35; final extension: 72°C/10 minutes. | ||||
| 1250 bp | AC GGAGTTACAAAGGACGAC | 23S rRNA |
| |
| AGCTCAGCCTTAACGAGTAC | ||||
| Primary denaturation: 94°C/5 minutes; secondary denaturation: 94°C/30 seconds; annealing: 55°C/40 seconds; extension: 72°C/1.2 minutes.; No. of cycles: 35; final extension: 72°C/12 minutes. | ||||
| E. coli | 266 bp | ATGTTATTTTCTGCCGCTCTG | Iss | Yaguchi et al., 2007 |
| CTATTGTGAGCAATATACCC | ||||
| Primary denaturation: 94°C/5 minutes; secondary denaturation: 94°C/30 seconds; annealing: 54°C/30 seconds; extension: 72°C/30 seconds; No. of cycles: 35; final extension: 72°C/7 minutes. | ||||
| 614 bp | ACACTGGATGATCTCAGTGG | Stx1 |
| |
| CTGAATCCCCCTCCATTATG | ||||
| Primary denaturation: 94°C/5 minutes; secondary denaturation: 94°C/30 seconds; annealing: 58°C/40 seconds; extension: 72°C/45 seconds; No. of cycles: 35; final extension: 72°C/10 minutes. | ||||
| 508 bp | TGCAGAACGGATAAGCCGTGG | fimH |
| |
| GCAGTCACCTGCCCTCCGGTA | ||||
| Primary denaturation: 94°C/5 minutes; secondary denaturation: 94°C/30 seconds; annealing: 50°C/40 seconds; extension: 72°C/45 seconds; No. of cycles: 35; final extension: 72°C/10 minutes. | ||||
| 620 bp | GGT GGT GCA CTG GAG TGG | Tsh | Delicato et al., 2003 | |
| AGT CCA GCG TGA TAG TGG | ||||
| Primary denaturation: 94°C/5 minutes; secondary denaturation: 94°C/30 seconds; annealing: 54°C/40 seconds; extension: 72°C/45 seconds; No. of cycles: 35; final extension: 72°C/10 minutes. | ||||
| 720 bp | CGATTCTGGAAATGGCAAAAG | phoA | Hu et al., 2011 | |
| CGTGATCAGCGGTGACTATGAC | ||||
| Primary denaturation: 94°C/5 minutes; secondary denaturation: 94°C/30 seconds; annealing: 55°C/40 seconds; extension: 72°C/45 seconds; No. of cycles: 35; final extension: 72°C/10 minutes. | ||||
Chemical analysis of examined samples (n = 50 each).
| Samples | Moisture % | Salt % | Acidity % | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Min. | Max. | Mean ± SE | Min. | Max. | Mean ± SE | Min. | Max. | Mean ± SE | |
| Ras cheese | 22.35 | 39.96 | 30.03 ± 0.59 | 2.00 | 4.40 | 3.30 ± 0.10 | 0.36 | 0.97 | 0.65 ± 0.02 |
| Domiati cheese | 48.92 | 62.92 | 56.44 ± 0.50 | 3.51 | 8.78 | 6.63 ± 0.20 | 0.36 | 2.16 | 0.68 ± 0.04 |
| Mish | 43.67 | 69.38 | 58.70 ± 0.97 | 3.51 | 9.33 | 7.56 ± 0.29 | 0.14 | 1.44 | 0.50 ± 0.05 |
Microbiological evaluation of examined samples (CFU/g) (n = 50 each).
| Ras cheese | Domiati cheese | Mish | ||
|---|---|---|---|---|
| Total bacterial count | ||||
| Min. | 5 × 105 | 7 × 104 | 7 × 103 | |
| Max. | 1 × 109 | 1 × 107 | 1 × 108 | |
| Mean ± SE | 2 × 108 ± 0.5 × 108 | 3 × 106 ± 0.4 × 106 | 1 × 107 ± 0.2 × 107 | |
| Coliforms count (MPN/g) | No. (%) of positive samples | 22 (44%) | 24 (48%) | 46 (92%) |
| Min. | 2 × 104 | 4 × 10 | 2 × 10 | |
| Max. | 2 × 106 | 2 × 102 | 2 × 103 | |
| Mean ± SE | 3 × 105 ± 1 × 105 | 5 × 10 ± 0.1 × 10 | 5 × 102 ± 0.8 × 102 | |
| No. (%) of positive samples | 46 (92%) | 44 (88%) | 50 (100%) | |
| Min. | 1 × 104 | 1 × 104 | 7 × 102 | |
| Max. | 6 × 106 | 2 × 106 | 9 × 105 | |
| Mean ± SE | 1 × 106 ± 0.2 × 106 | 4 × 105 ± 0.7×105 | 1 × 105 ± 0.2 × 105 | |
| Yeast count | No. (%) of positive samples | 45 (90%) | 50 (100%) | 46 (92%) |
| Min. | 1 × 104 | 3 × 103 | 4 × 103 | |
| Max. | 1 × 106 | 8 × 105 | 1 × 106 | |
| Mean ± SE | 3 × 105 ± 0.6 × 105 | 1 × 105 ± 0.2 × 105 | 5 × 105 ± 0.6 × 105 | |
| Mold count | No. (%) of positive samples | 25 (50%) | 22 (44%) | 36 (72%) |
| Min. | 2 × 103 | 1 × 103 | 3 × 102 | |
| Max. | 2 × 104 | 2 × 104 | 1 × 105 | |
| Mean ± SE | 7 × 103 ± 0.9 × 103 | 4 × 103 ± 0.9 × 103 | 3 × 104 ± 0.7 × 104 | |
Biochemical, serological, molecular identification, and incidence of virulence genes of E. coli isolated from examined samples using PCR.
| Types of samples | Samples containing | Strains identified serologically | Strains identified by phoA gene | Strains harbor Stx1 gene | Strains harbor Tsh gene | Strains harbor Iss gene | Strains harbor fimH gene | |||
|---|---|---|---|---|---|---|---|---|---|---|
| No. | % | No. | serotype | |||||||
| No. | type | No. | No. | No. | No. | No. | ||||
| Ras cheese | 4 | 8 | 4 | 3 | O125 | 4 | Nil | Nil | 4 | 4 |
| 1 | O18 | |||||||||
| Domiati cheese | 2 | 4 | 2 | 2 | O125 | 2 | 2 | 2 | ||
| Mish | 2 | 4 | 2 | 2 | O114 | 2 | 2 | 2 | ||
Fig. 1.Agarose gel electrophoresis of the PCR product of phoA gene for DNA extracted from analyzed E. coil isolates. Lane L: ladder; Lane P: positive control. Lanes 1–8: showing positive E. coil strains at 720 bp.
Fig. 2.Agarose gel electrophoresis of E. coil stx1 virulence gene. Lane L: ladder; Lane P: positive control. Lanes 1–8: showing negative strains at 614 bp.
Fig. 5.Agarose gel electrophoresis of E. coil fimH virulence gene. Lane L: ladder; Lane P: positive control. Lanes 1–8: showing positive strains at 508 bp.
Biochemical, molecular identification, and incidence of enterotoxin genes of S. aureus isolated from examined samples using multiplex PCR.
| Types of samples | Samples harbor coagulase positive | Strains identified by | Samples harbor enterotoxigenic strains | Type of SEs | |||||
|---|---|---|---|---|---|---|---|---|---|
| sea | seb | sec | sed | see | |||||
| No. | % | No. | No. | No. | No. | No. | No. | No. | |
| Ras cheese | 13 | 26 | 2 | 2 | Nil | 2 | Nil | 1 | Nil |
| Domiati cheese | 18 | 36 | 13 | 10 | 10 | 3 | 1 | ||
| Mish | 9 | 18 | 6 | 6 | 6 | Nil | Nil | ||
Fig. 6.Agarose gel electrophoresis of the PCR product of 23S rRNA gene for DNA extracted from analyzed S. aureus isolates. Lane L: ladder; Lane P: positive control. Lanes 1–21: showing positive S. aureus strains at 1,250 bp.
Fig. 7.Agarose gel electrophoresis showing multiplex PCR amplification products for S. aureus enterotoxin genes. Lanes L, ladder lane P: positive control. Staphylococcal enterotoxin A (sea) positive isolates at 102 bp. Staphylococcal enterotoxin D (sed) positive isolates at 278 bp. Staphylococcal enterotoxin E (see) positive isolates at 209 bp. Staphylococcal enterotoxin B (seb) positive isolates at 164 bp. Staphylococcal enterotoxin C (sec) positive isolates at 451 bp.
Statistical correlation between chemical and microbiological analyses.
| Moisture % | Salt % | Acidity % | ||||
|---|---|---|---|---|---|---|
| Pearson correlation | Sig. | Pearson correlation | Sig. | Pearson correlation | Sig. | |
| Ras cheese | ||||||
| TBC | 0.215 | 0.134 | −0.151 | 0.295 | −0.171 | 0.235 |
| Coliforms count | 0.430 | 0.002 | −0.394 | 0.005 | −0.048 | 0.739 |
| Staph. count | 0.182 | 0.207 | −0.197 | 0.170 | −0.088 | 0.542 |
| Yeast count | 0.067 | 0.644 | −0.070 | 0.630 | −0.169 | 0.240 |
| Mold count | 0.169 | 0.241 | −0.094 | 0.518 | −0.078 | 0.589 |
| Domiati cheese | ||||||
| TBC | 0.326 | 0.021 | −0.170 | 0.237 | −0.237 | 0.097 |
| Coliforms count | 0.229 | 0.110 | −0.806 | 0.000 | −0.103 | 0.475 |
| 0.388 | 0.005 | −0.267 | 0.061 | −0.391 | 0.005 | |
| Yeast count | 0.115 | 0.427 | −0.306 | 0.031 | −0.245 | 0.086 |
| Mold count | 0.062 | 0.668 | −0.142 | 0.327 | −0.256 | 0.073 |
| Mish | ||||||
| TBC | 0.423 | 0.022 | −0.169 | 0.381 | −0.047 | 0.807 |
| Coliforms count | 0.039 | 0.788 | −0.590 | 0.000 | −0.165 | 0.215 |
| Staph. count | 0.131 | 0.364 | −0.315 | 0.026 | −0.516 | 0.000 |
| Yeast count | 0.556 | 0.000 | −0.221 | 0.123 | −0.481 | 0.000 |
| Mold count | 0.054 | 0.707 | −0.144 | 0.317 | −0.259 | 0.070 |
Correlation is significant at the 0.01 level (2-tailed).
Correlation is significant at the 0.05 level (2-tailed).