Literature DB >> 33282439

Performance of concanavalin A-immobilized on polyacrylate beads for the detection of human norovirus and hepatitis A virus in fecal specimens.

Songhak Kim1, Susanne U Mertens-Talcott2, Bipin Vaidya1, Vinicius Paula Venancio2, Se-Young Cho1, Jong-Am Song3, Boon P Chew2, Joseph Kwon3, Duwoon Kim1.   

Abstract

Quantitative reverse transcription PCR (qRT-PCR) is a sensitive method for the detection of foodborne viruses in fecal samples. However, the performance of qRT-PCR depends on the efficiency of virus concentration methods. In this study, the effect of Concanavalin A (Con A)-immobilized on polyacrylate beads (Con A-PAB) on the qRT-PCR performance, in terms of sensitivity and specificity to detect foodborne viruses in human fecal specimens was compared with commercial viral RNA extraction kit (VRNA). The detection of foodborne viruses by qRT-PCR was validated by viral genome sequencing. Both Con A-PAB and VRNA methods were equally sensitive and specific for detecting hepatitis A virus in fecal specimens. Even though both methods showed high specificity (100% vs. 100%) for detecting human norovirus (HuNoV), Con A-PAB method exhibited higher sensitivity (100% vs. 42.9%) and accuracy (100% vs. 73.3%) compared to VRNA method. In conclusion, the application of Con A-PAB would improve the performance of qRT-PCR for the detection of HuNoV in fecal samples. © The Korean Society of Food Science and Technology 2020.

Entities:  

Keywords:  Concanavalin A; Hepatitis A virus; Human norovirus; Sensitivity; Specificity

Year:  2020        PMID: 33282439      PMCID: PMC7708564          DOI: 10.1007/s10068-020-00833-4

Source DB:  PubMed          Journal:  Food Sci Biotechnol        ISSN: 1226-7708            Impact factor:   2.391


  33 in total

Review 1.  Pre-PCR processing: strategies to generate PCR-compatible samples.

Authors:  Peter Rådström; Rickard Knutsson; Petra Wolffs; Maria Lövenklev; Charlotta Löfström
Journal:  Mol Biotechnol       Date:  2004-02       Impact factor: 2.695

2.  Immiscible phase nucleic acid purification eliminates PCR inhibitors with a single pass of paramagnetic particles through a hydrophobic liquid.

Authors:  Kunal Sur; Sally M McFall; Emilie T Yeh; Sujit R Jangam; Mark A Hayden; Stephen D Stroupe; David M Kelso
Journal:  J Mol Diagn       Date:  2010-06-25       Impact factor: 5.568

3.  Immunomagnetic separation combined with real-time reverse transcriptase PCR assays for detection of norovirus in contaminated food.

Authors:  YoungBin Park; You-Hee Cho; YoungMee Jee; GwangPyo Ko
Journal:  Appl Environ Microbiol       Date:  2008-04-25       Impact factor: 4.792

4.  Discrepancies between Antigen and Polymerase Chain Reaction Tests for the Detection of Rotavirus and Norovirus.

Authors:  Hyun Soo Kim; Jae-Seok Kim
Journal:  Ann Clin Lab Sci       Date:  2016-05       Impact factor: 1.256

5.  Evaluation of various real-time RT-PCR assays for the detection and quantitation of human norovirus.

Authors:  Sophie Butot; Francoise S Le Guyader; Joanna Krol; Thierry Putallaz; Richard Amoroso; Gloria Sánchez
Journal:  J Virol Methods       Date:  2010-03-31       Impact factor: 2.014

6.  Development of an immunomagnetic capture reverse transcription-PCR assay for the detection of Norwalk virus.

Authors:  S G Gilpatrick; K J Schwab; M K Estes; R L Atmar
Journal:  J Virol Methods       Date:  2000-10       Impact factor: 2.014

7.  A simple method to recover Norovirus from fresh produce with large sample size by using histo-blood group antigen-conjugated to magnetic beads in a recirculating affinity magnetic separation system (RCAMS).

Authors:  Peng Tian; David Yang; Robert Mandrell
Journal:  Int J Food Microbiol       Date:  2011-04-15       Impact factor: 5.277

8.  Comparison of commercial viral genomic extraction kits for the molecular detection of foodborne viruses.

Authors:  Julie Brassard; Lisyanne Lamoureux; Marie-Josée Gagné; Elyse Poitras; Yvon-Louis Trottier; Alain Houde
Journal:  Can J Microbiol       Date:  2009-08       Impact factor: 2.419

9.  Structural Constraints on Human Norovirus Binding to Histo-Blood Group Antigens.

Authors:  Bishal K Singh; Mila M Leuthold; Grant S Hansman
Journal:  mSphere       Date:  2016-03-30       Impact factor: 4.389

10.  Exploration of the metal coordination region of concanavalin A for its interaction with human norovirus.

Authors:  Duwoon Kim; Hee-Min Lee; Kyung-Seo Oh; Ah Young Ki; Rachael A Protzman; Dongkyun Kim; Jong-Soon Choi; Min Ji Kim; Sung Hyun Kim; Bipin Vaidya; Seung Jae Lee; Joseph Kwon
Journal:  Biomaterials       Date:  2017-03-06       Impact factor: 12.479

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