Literature DB >> 33279952

Emerging roles of RNA modifications in genome integrity.

Seo Yun Lee1, Jae Jin Kim1, Kyle M Miller2.   

Abstract

Post-translational modifications of proteins are well-established participants in DNA damage response (DDR) pathways, which function in the maintenance of genome integrity. Emerging evidence is starting to reveal the involvement of modifications on RNA in the DDR. RNA modifications are known regulators of gene expression but how and if they participate in DNA repair and genome maintenance has been poorly understood. Here, we review several studies that have now established RNA modifications as key components of DNA damage responses. RNA modifying enzymes and the binding proteins that recognize these modifications localize to and participate in the repair of UV-induced and DNA double-strand break lesions. RNA modifications have a profound effect on DNA-RNA hybrids (R-loops) at DNA damage sites, a structure known to be involved in DNA repair and genome stability. Given the importance of the DDR in suppressing mutations and human diseases such as neurodegeneration, immunodeficiencies, cancer and aging, RNA modification pathways may be involved in human diseases not solely through their roles in gene expression but also by their ability to impact DNA repair and genome stability.
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Entities:  

Keywords:  DNA damage; DNA repair; R-loops; RNA modification; genome integrity; transcription

Year:  2021        PMID: 33279952      PMCID: PMC8008162          DOI: 10.1093/bfgp/elaa022

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  68 in total

Review 1.  Preserving genome integrity and function: the DNA damage response and histone modifications.

Authors:  Jae Jin Kim; Seo Yun Lee; Kyle M Miller
Journal:  Crit Rev Biochem Mol Biol       Date:  2019-06-04       Impact factor: 8.250

Review 2.  CRISPR-Cas9 Structures and Mechanisms.

Authors:  Fuguo Jiang; Jennifer A Doudna
Journal:  Annu Rev Biophys       Date:  2017-03-30       Impact factor: 12.981

Review 3.  Perfecting DNA double-strand break repair on transcribed chromatin.

Authors:  Xin Yi Tan; Michael S Y Huen
Journal:  Essays Biochem       Date:  2020-10-26       Impact factor: 8.000

4.  Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.

Authors:  Kate D Meyer; Yogesh Saletore; Paul Zumbo; Olivier Elemento; Christopher E Mason; Samie R Jaffrey
Journal:  Cell       Date:  2012-05-17       Impact factor: 41.582

5.  Three distinct 3-methylcytidine (m3C) methyltransferases modify tRNA and mRNA in mice and humans.

Authors:  Luang Xu; Xinyu Liu; Na Sheng; Kyaw Soe Oo; Junxin Liang; Yok Hian Chionh; Juan Xu; Fuzhou Ye; Yong-Gui Gao; Peter C Dedon; Xin-Yuan Fu
Journal:  J Biol Chem       Date:  2017-06-27       Impact factor: 5.157

Review 6.  Mechanism of homologous recombination: mediators and helicases take on regulatory functions.

Authors:  Patrick Sung; Hannah Klein
Journal:  Nat Rev Mol Cell Biol       Date:  2006-08-23       Impact factor: 94.444

7.  RNA-templated DNA repair.

Authors:  Francesca Storici; Katarzyna Bebenek; Thomas A Kunkel; Dmitry A Gordenin; Michael A Resnick
Journal:  Nature       Date:  2007-04-11       Impact factor: 49.962

Review 8.  A double-edged sword: R loops as threats to genome integrity and powerful regulators of gene expression.

Authors:  Konstantina Skourti-Stathaki; Nicholas J Proudfoot
Journal:  Genes Dev       Date:  2014-07-01       Impact factor: 11.361

9.  DNA damage triggers SAF-A and RNA biogenesis factors exclusion from chromatin coupled to R-loops removal.

Authors:  Sébastien Britton; Emma Dernoncourt; Christine Delteil; Carine Froment; Odile Schiltz; Bernard Salles; Philippe Frit; Patrick Calsou
Journal:  Nucleic Acids Res       Date:  2014-07-16       Impact factor: 16.971

10.  Drosha drives the formation of DNA:RNA hybrids around DNA break sites to facilitate DNA repair.

Authors:  Wei-Ting Lu; Ben R Hawley; George L Skalka; Robert A Baldock; Ewan M Smith; Aldo S Bader; Michal Malewicz; Felicity Z Watts; Ania Wilczynska; Martin Bushell
Journal:  Nat Commun       Date:  2018-02-07       Impact factor: 14.919

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  1 in total

Review 1.  Joining the PARty: PARP Regulation of KDM5A during DNA Repair (and Transcription?).

Authors:  Anthony Sanchez; Bethany A Buck-Koehntop; Kyle M Miller
Journal:  Bioessays       Date:  2022-05-09       Impact factor: 4.653

  1 in total

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