Literature DB >> 33279816

Structure-forming repeats and their impact on genome stability.

Rebecca E Brown1, Catherine H Freudenreich2.   

Abstract

Repetitive sequences throughout the genome are a major source of endogenous DNA damage, due to the propensity of many of them to form alternative non-B DNA structures that can interfere with replication, transcription, and DNA repair. These repetitive sequences are prone to breakage (fragility) and instability (changes in repeat number). Repeat fragility and expansions are linked to several diseases, including many cancers and neurodegenerative diseases, hence the importance of understanding the mechanisms that cause genome instability and contribute to these diseases. This review focuses on recent findings of mechanisms causing repeat fragility and instability, new associations between repeat expansions and genetic diseases, and potential therapeutic options to target repeat expansions.
Copyright © 2020 Elsevier Ltd. All rights reserved.

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Year:  2020        PMID: 33279816      PMCID: PMC8084909          DOI: 10.1016/j.gde.2020.10.006

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  77 in total

1.  Mutational mechanism for DAB1 (ATTTC)n insertion in SCA37: ATTTT repeat lengthening and nucleotide substitution.

Authors:  Joana R Loureiro; Cláudia L Oliveira; Carolina Mota; Ana F Castro; Cristina Costa; José L Loureiro; Paula Coutinho; Sandra Martins; Jorge Sequeiros; Isabel Silveira
Journal:  Hum Mutat       Date:  2019-01-09       Impact factor: 4.878

2.  Distinct roles for S. cerevisiae H2A copies in recombination and repeat stability, with a role for H2A.1 threonine 126.

Authors:  Nealia Cm House; Erica J Polleys; Ishtiaque Quasem; Marjorie De la Rosa Mejia; Cailin E Joyce; Oliver Takacsi-Nagy; Jocelyn E Krebs; Stephen M Fuchs; Catherine H Freudenreich
Journal:  Elife       Date:  2019-12-05       Impact factor: 8.140

Review 3.  Trinucleotide repeat instability during double-strand break repair: from mechanisms to gene therapy.

Authors:  Valentine Mosbach; Lucie Poggi; Guy-Franck Richard
Journal:  Curr Genet       Date:  2018-07-05       Impact factor: 3.886

4.  Genetic and Functional Analyses Point to FAN1 as the Source of Multiple Huntington Disease Modifier Effects.

Authors:  Kyung-Hee Kim; Eun Pyo Hong; Jun Wan Shin; Michael J Chao; Jacob Loupe; Tammy Gillis; Jayalakshmi S Mysore; Peter Holmans; Lesley Jones; Michael Orth; Darren G Monckton; Jeffrey D Long; Seung Kwak; Ramee Lee; James F Gusella; Marcy E MacDonald; Jong-Min Lee
Journal:  Am J Hum Genet       Date:  2020-06-25       Impact factor: 11.025

5.  Genome-wide Identification of Structure-Forming Repeats as Principal Sites of Fork Collapse upon ATR Inhibition.

Authors:  Nishita Shastri; Yu-Chen Tsai; Suzanne Hile; Deondre Jordan; Barrett Powell; Jessica Chen; Dillon Maloney; Marei Dose; Yancy Lo; Theonie Anastassiadis; Osvaldo Rivera; Taehyong Kim; Sharvin Shah; Piyush Borole; Kanika Asija; Xiang Wang; Kevin D Smith; Darren Finn; Jonathan Schug; Rafael Casellas; Liliya A Yatsunyk; Kristin A Eckert; Eric J Brown
Journal:  Mol Cell       Date:  2018-10-04       Impact factor: 17.970

6.  Somatic expansion of the Huntington's disease CAG repeat in the brain is associated with an earlier age of disease onset.

Authors:  Meera Swami; Audrey E Hendricks; Tammy Gillis; Tiffany Massood; Jayalakshmi Mysore; Richard H Myers; Vanessa C Wheeler
Journal:  Hum Mol Genet       Date:  2009-05-23       Impact factor: 6.150

7.  The role of break-induced replication in large-scale expansions of (CAG)n/(CTG)n repeats.

Authors:  Jane C Kim; Samantha T Harris; Teresa Dinter; Kartik A Shah; Sergei M Mirkin
Journal:  Nat Struct Mol Biol       Date:  2016-12-05       Impact factor: 15.369

8.  Precise Excision of the CAG Tract from the Huntingtin Gene by Cas9 Nickases.

Authors:  Magdalena Dabrowska; Wojciech Juzwa; Wlodzimierz J Krzyzosiak; Marta Olejniczak
Journal:  Front Neurosci       Date:  2018-02-26       Impact factor: 4.677

9.  The nuclear pore complex prevents sister chromatid recombination during replicative senescence.

Authors:  Paula Aguilera; Jenna Whalen; Christopher Minguet; Dmitri Churikov; Catherine Freudenreich; Marie-Noëlle Simon; Vincent Géli
Journal:  Nat Commun       Date:  2020-01-09       Impact factor: 14.919

10.  Promotion of somatic CAG repeat expansion by Fan1 knock-out in Huntington's disease knock-in mice is blocked by Mlh1 knock-out.

Authors:  Jacob M Loupe; Ricardo Mouro Pinto; Kyung-Hee Kim; Tammy Gillis; Jayalakshmi S Mysore; Marissa A Andrew; Marina Kovalenko; Ryan Murtha; IhnSik Seong; James F Gusella; Seung Kwak; David Howland; Ramee Lee; Jong-Min Lee; Vanessa C Wheeler; Marcy E MacDonald
Journal:  Hum Mol Genet       Date:  2020-11-04       Impact factor: 6.150

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  5 in total

Review 1.  Homologous recombination within repetitive DNA.

Authors:  Erica J Polleys; Catherine H Freudenreich
Journal:  Curr Opin Genet Dev       Date:  2021-08-28       Impact factor: 5.578

Review 2.  The Startling Role of Mismatch Repair in Trinucleotide Repeat Expansions.

Authors:  Guy-Franck Richard
Journal:  Cells       Date:  2021-04-26       Impact factor: 6.600

Review 3.  FAN1, a DNA Repair Nuclease, as a Modifier of Repeat Expansion Disorders.

Authors:  Amit L Deshmukh; Antonio Porro; Mohiuddin Mohiuddin; Stella Lanni; Gagan B Panigrahi; Marie-Christine Caron; Jean-Yves Masson; Alessandro A Sartori; Christopher E Pearson
Journal:  J Huntingtons Dis       Date:  2021

Review 4.  Mechanisms of Genome Instability in the Fragile X-Related Disorders.

Authors:  Bruce E Hayward; Karen Usdin
Journal:  Genes (Basel)       Date:  2021-10-17       Impact factor: 4.096

5.  Distinct sequence features underlie microdeletions and gross deletions in the human genome.

Authors:  Mengling Qi; Peter D Stenson; Edward V Ball; John A Tainer; Albino Bacolla; Hildegard Kehrer-Sawatzki; David N Cooper; Huiying Zhao
Journal:  Hum Mutat       Date:  2022-02-01       Impact factor: 4.700

  5 in total

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