Literature DB >> 33275809

Targeting the Surface of the Protein 14-3-3 by Ultrasmall (1.5 nm) Gold Nanoparticles Carrying the Specific Peptide CRaf.

Tatjana Ruks1, Kateryna Loza1, Marc Heggen2, Christian Ottmann3, Peter Bayer4, Christine Beuck4, Matthias Epple1.   

Abstract

The surface of ultrasmall gold nanoparticles with an average diameter of 1.55 nm was conjugated with a 14-3-3 protein-binding peptide derived from CRaf. Each particle carries 18 CRaf peptides, leading to an overall stoichiometry of Au(115)Craf(18). The binding to the protein 14-3-3 was probed by isothermal titration calorimetry (ITC) and fluorescence polarization spectroscopy (FP). The dissociation constant (KD ) was measured as 5.0 μM by ITC and 0.9 μM by FP, which was close to the affinity of dissolved CRaf to 14-3-3σ. In contrast to dissolved CRaf, which alone did not enter HeLa cells, CRAF-conjugated gold nanoparticles were well taken up by HeLa cells, opening the opportunity to target the protein inside a cell.
© 2020 The Authors. ChemBioChem published by Wiley-VCH GmbH.

Entities:  

Keywords:  Gold; nanoparticles; peptides; proteins; supramolecular chemistry

Mesh:

Substances:

Year:  2021        PMID: 33275809      PMCID: PMC8248332          DOI: 10.1002/cbic.202000761

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


Introduction

The supramolecular interaction between small molecules and proteins is an important area in current biomedical research. It opens the possibility to influence the function of proteins by specifically targeting surface epitopes. Peptides are especially useful as they give a highly selective interaction with proteins. The protein 14‐3‐3 is of special interest because it is one of the most widely connected “hub” proteins in humans, therefore chemical agents that are targeting 14‐3‐3 protein‐protein interactions (PPIs) are becoming increasingly interesting for drug discovery. We have earlier shown that 14‐3‐3 PPIs can be modulated by natural products and their semisynthetic derivatives, supramolecular ligands, “classical” small molecules, and fragments.[ , ] The potential of supramolecular binding molecules can be enhanced by conjugating them to an ultrasmall nanoparticle (1–2 nm). Such particles have a diameter even below the size of a protein. The possibility to attach more than one ligand to a single nanoparticle permits multiavid targeting of the protein surface. Chemically, ultrasmall nanoparticles are at the borderline between atom‐sharp metal clusters (ca. 1 nm) and “classical” metallic nanoparticles with a diameter of 10 nm or more. Due to their small size, they have been explored in the last years for biological and biomedical applications.[ , ] For instance, such nanoparticles can serve as carriers of surface‐conjugated cargo molecules into cells and (in some cases) even into the cell nucleus. They can be surface‐conjugated by thiol‐containing ligands that lead to a strong Au−S covalent bond. In the case of biomolecules, cysteine and cysteine‐containing peptides and ligands are of particular value for nanoparticle conjugation.[ , , , ] The diphosphorylated (pS233pS259) CRaf peptide is a strong binder for 14‐3‐3 proteins.[ , ] Here we demonstrate how ultrasmall gold nanoparticles can be surface‐conjugated with the protein‐targeting peptide CRaf (residues 229–264, subsequently termed as CRaf) and show their interaction with the protein 14‐3‐3σ and also their uptake by eukaryotic cells.

Results and Discussion

We have chosen the peptide CRaf in a cysteine‐modified form for its conjugation to ultrasmall gold nanoparticles to target epitopes on the surface of the protein 14‐3‐3. Equidistant between the two phosphorylated residues pS233 and pS259, a cysteine was introduced at position 246, leaving the peptide binding arms unchanged. The peptide was attached to the ultrasmall gold nanoparticles via the thiol group of this cysteine. The size of the metallic nanoparticle core was probed by aberration‐corrected transmission electron microscopy. It should be noted that the image contrast of the particles with respect to the background is weak, even with an aberration‐corrected electron microscope, because of the small size of the particles with respect to the coating by a considerable amount of organic peptide shell (Figure 1) and the thickness of the carbon support. However, individual particles could be well distinguished with an average diameter of 1.55 nm. This corresponds to about 115 gold atoms under the assumption of a spherical particle.
Figure 1

High‐resolution transmission electron microscopy (HRTEM) of CRaf‐conjugated ultrasmall gold nanoparticles. Left: particles. Right: particle size distribution.

High‐resolution transmission electron microscopy (HRTEM) of CRaf‐conjugated ultrasmall gold nanoparticles. Left: particles. Right: particle size distribution. The attachment of the CRaf peptide was shown by 1H NMR spectroscopy (Figure 2). Clearly, the ligand was attached in unchanged form, with only small changes in the spectrum. This is due to the facts that the peptide is rather big, and that most amino acids (and protons) are in a considerable distance from the metal core and also likely retained most of their flexibility. Thus, peak broadening as it is usually observed with ligands on ultrasmall nanoparticles was mostly avoided.[ , ]
Figure 2

1H NMR spectra of unlabeled CRaf in dissolved state (top) and attached to ultrasmall gold nanoparticles (bottom). Glycerol is an impurity from nanofiltration.

1H NMR spectra of unlabeled CRaf in dissolved state (top) and attached to ultrasmall gold nanoparticles (bottom). Glycerol is an impurity from nanofiltration. The peptide was firmly attached to the nanoparticles as demonstrated by 1H DOSY NMR spectroscopy (Figure 3). Clearly, all 1H NMR signals were associated with the same diffusion coefficient. As hydrodynamic diameter, 2.6 and 3.6 nm were obtained for peptide and nanoparticles, respectively. No free (unbound) CRaf was present in the nanoparticle dispersion.
Figure 3

Top: 1H DOSY spectra of dissolved CRaf (left) and of CRaf‐functionalized gold nanoparticles (right). Glycerol is an impurity from nanofiltration. Bottom: Stejskal‐Tanner plots of dissolved CRaf (blue) and of CRaf‐functionalized gold nanoparticles (red). The slope is proportional to the diffusion coefficient, indicating that nanoparticles diffuse more slowly and thus have a higher hydrodynamic diameter.

Top: 1H DOSY spectra of dissolved CRaf (left) and of CRaf‐functionalized gold nanoparticles (right). Glycerol is an impurity from nanofiltration. Bottom: Stejskal‐Tanner plots of dissolved CRaf (blue) and of CRaf‐functionalized gold nanoparticles (red). The slope is proportional to the diffusion coefficient, indicating that nanoparticles diffuse more slowly and thus have a higher hydrodynamic diameter. The particle size distribution of the dispersed nanoparticles was also analyzed by differential centrifugal sedimentation (DCS), giving a hydrodynamic diameter of 1.5 nm (Figure 4). However, the diameters obtained by this method are systematically too small for functionalized ultrasmall nanoparticles because it is probing the hydrodynamic diameter by sedimentation, assuming a uniform density of the particle. Thus, this diameter is clearly too small. If the solid particle carries a peptide shell, it sediments more slowly than expected because its effective density is lower than that of the gold core (19.3 g cm−3). Nevertheless, the DCS results clearly show that the nanoparticles are present in a well‐dispersed state without major agglomerations. It is also noteworthy we worked at the borderline of the method with a centrifugation time of about 5 h, that is, the sedimentation rate was low due to the ultrasmall particle size. This is enhanced by the long peptide chain of CRaf that is attached to the nanoparticles, increasing the hydrodynamic diameter.
Figure 4

Differential centrifugal sedimentation of ultrasmall gold nanoparticles, functionalized with CRaf.

Differential centrifugal sedimentation of ultrasmall gold nanoparticles, functionalized with CRaf. The surface loading of the nanoparticles with peptides was probed by UV spectroscopy with the FAM‐labeled CRaf peptide (Figure 5). There was only little quenching (if at all) because the nanoparticles are ultrasmall, in accordance with earlier observations with similar nanoparticles. From the determination of the gold concentration by atomic absorption spectroscopy (AAS) which was converted to nanoparticles (1.55 nm, 115 gold atoms), we obtained 18 CRaf molecules on the surface of each gold particle (see the Experimental Section for a detailed calculation). As the molecular weight of each CRaf peptide is 4 193 g mol−1, the composition of each nanoparticle is about 115 ⋅ 197 g mol−1=22 655 g mol−1 (1 gold and 18 ⋅ 4 193 g mol−1=75 474 g mol−1 CRaf, giving a weight ratio of about 22 655 : 75 474=1 : 3.3=m(Au)/m(CRaf). Consequently, each particle consists of about 23 wt% Au and 77 wt% peptide. In terms of volume, the metallic core (1.55 nm) occupies 1.95 nm3, that is, only about 8 % of the total hydrodynamic volume (24.4 nm3, based on a hydrodynamic diameter of 3.6 nm). Each CRaf molecule has a molecular footprint of 0.41 nm2. For cysteine on 1.78 nm gold nanoparticles, we found a smaller footprint of 0.15 nm2[11] which makes sense due to the bigger peptide CRaf and its “two‐armed” attachment to the nanoparticle surface. Figure 6 visualizes the structure of a gold nanoparticle with a CRaf ligand, including its interaction with 14‐3‐3. The homodimeric protein 14‐3‐3σ has a molecular weight of 57.62 kDa and a diameter of about 6.8 nm (PDB ID: 4FJ3).
Figure 5

Fluorescence excitation and emission spectra of FAM‐labeled CRaf‐functionalized ultrasmall gold nanoparticles with an absorption maximum at 495 nm and an emission maximum at 520 nm.

Figure 6

Top: Schematic view of the modified sequence of CRaf, conjugated to a gold nanoparticle (1.55 nm in diameter), visualized by PyMOL (The PyMOL Molecular Graphics System, Version 2.0 Schrödinger, LLC). Bottom: Schematic view of CRaf on a gold nanoparticle interacting with the homodimeric protein 14‐3‐3σ. Only the amino acids that interact with the protein binding region are shown; the other part of the chain is shown as a dashed line. The structural data were taken from the protein database (PDB ID: 4FJ3) and visualized by PyMOL.

Fluorescence excitation and emission spectra of FAM‐labeled CRaf‐functionalized ultrasmall gold nanoparticles with an absorption maximum at 495 nm and an emission maximum at 520 nm. Top: Schematic view of the modified sequence of CRaf, conjugated to a gold nanoparticle (1.55 nm in diameter), visualized by PyMOL (The PyMOL Molecular Graphics System, Version 2.0 Schrödinger, LLC). Bottom: Schematic view of CRaf on a gold nanoparticle interacting with the homodimeric protein 14‐3‐3σ. Only the amino acids that interact with the protein binding region are shown; the other part of the chain is shown as a dashed line. The structural data were taken from the protein database (PDB ID: 4FJ3) and visualized by PyMOL. The specific interaction of CRaf with 14‐3‐3σ was probed by isothermal titration calorimetry (Figure 7). The interaction of dissolved CRaf gave a dissociation constant K D of 1.3±0.1 μM, i. e. a rather strong interaction. The binding ratio CRaf/14‐3‐3σ was 0.84±0.01, that is, each peptide was bound by one protein. The interaction was exothermic with 67±1 kJ mol−1 (15.7±0.14 kcal mol−1). However, the binding is weaker than reported earlier by Molzan et al. who found a K D of 0.08 μM for CRaf and the isomer 14‐3‐3ζ. This likely is an artifact of the fitting procedure because, in contrast to the free peptide in solution, not all peptides on a given nanoparticle can possibly be bound by protein due to steric reasons, which results in overestimating the K D.
Figure 7

Interaction of dissolved CRaf peptide with 14‐3‐3σ as probed by ITC. The differential heat flow (top) and the Wiseman plot (bottom) are shown.

Interaction of dissolved CRaf peptide with 14‐3‐3σ as probed by ITC. The differential heat flow (top) and the Wiseman plot (bottom) are shown. For nanoparticle‐conjugated CRaf and 14‐3‐3σ, we measured a K D of 5.0±0.1 μM and a binding enthalpy of 19±2 kJ mol−1 (4.57±0.35 kcal mol−1). The binding ratio CRaf/14‐3‐3σ dimer was 0.75±0.03, that is, comparable to the free peptide (Figure 8).
Figure 8

Interaction of CRaf‐conjugated gold nanoparticles with 14‐3‐3σ as probed by ITC. The differential heat flow (top) and the Wiseman plot are shown with the concentration of CRaf set to 18 times the concentration of gold nanoparticles (bottom; see text).

Interaction of CRaf‐conjugated gold nanoparticles with 14‐3‐3σ as probed by ITC. The differential heat flow (top) and the Wiseman plot are shown with the concentration of CRaf set to 18 times the concentration of gold nanoparticles (bottom; see text). Fluorescence polarization spectroscopy is an alternative method to study the interaction between a protein and a binding ligand. The protein 14‐3‐3σ was titrated to a solution of FAM‐CRaf or a dispersion of FAM‐CRaf on gold nanoparticles, respectively (Figure 9). For the dissolved ligand, we determined a K D of 1.5±0.1 μM, in good agreement with Molzan et al. for 14‐3‐3ζ. For CRaf on gold nanoparticles, we found 0.9±0.1 μM with 18 CRaf molecules on each gold nanoparticle. The binding strength was comparable or even slightly higher than that of CRaf alone.
Figure 9

Interaction of dissolved FAM‐CRaf and of FAM‐CRaf‐conjugated gold nanoparticles with 14‐3‐3σ as probed by FP. The starting concentration of dissolved FAM‐CRaf was 20 nM (V=60 μL). The starting concentration of the FAM‐CRaf gold nanoparticles was 31 nM, corresponding to a peptide concentration of 560 nM (V=60 μL). The concentration of the ligand CRaf was set to 18 times the gold nanoparticle concentration. The concentration of the added 14‐3‐3σ protein stock solution was 50 μM (total added volume 40 μL).

Interaction of dissolved FAM‐CRaf and of FAM‐CRaf‐conjugated gold nanoparticles with 14‐3‐3σ as probed by FP. The starting concentration of dissolved FAM‐CRaf was 20 nM (V=60 μL). The starting concentration of the FAM‐CRaf gold nanoparticles was 31 nM, corresponding to a peptide concentration of 560 nM (V=60 μL). The concentration of the ligand CRaf was set to 18 times the gold nanoparticle concentration. The concentration of the added 14‐3‐3σ protein stock solution was 50 μM (total added volume 40 μL). For a practical application, it is important to target proteins inside cells. Therefore, we investigated the uptake of CRaf‐conjugated gold nanoparticles by HeLa cells (Figure 10). The particles were easily taken up whereas dissolved CRaf could enter the cells only to a very small extent (Figure 11). This illustrates that a carrier is needed to transport functional peptides across the cell membrane. However, additional studies would be required to prove that the CRaf‐functionalized nanoparticles are actually targeting the protein 14‐3‐3 inside the cell. The fact that we observed only few agglomerations by confocal microscopy indicates that the particles are well dispersed in cell culture medium. Unfortunately, dynamic light scattering is not applicable because the particles are too small.
Figure 10

Uptake of FAM‐CRaf‐conjugated ultrasmall gold nanoparticles by HeLa cells (3.3⋅1014 nanoparticles per well; 10 000 cells per well) after 24 h of incubation. Actin: red, cell nucleus: blue, nanoparticles: green.

Figure 11

Uptake of FAM‐CRaf by HeLa cells (CRaf concentration in the well 10 μM; 10000 cells per well) after 24 h of incubation. Actin: red, cell nucleus: blue, nanoparticles: green.

Uptake of FAM‐CRaf‐conjugated ultrasmall gold nanoparticles by HeLa cells (3.3⋅1014 nanoparticles per well; 10 000 cells per well) after 24 h of incubation. Actin: red, cell nucleus: blue, nanoparticles: green. Uptake of FAM‐CRaf by HeLa cells (CRaf concentration in the well 10 μM; 10000 cells per well) after 24 h of incubation. Actin: red, cell nucleus: blue, nanoparticles: green. Table 1 summarizes all measured properties of dissolved CRaf and of CRaf, conjugated to gold nanoparticles.
Table 1

Properties of dissolved CRaf and of CRAF‐conjugated ultrasmall gold nanoparticles from 1H DOSY, DCS, and HRTEM. An error of 10 % for the diffusion coefficient and the hydrodynamic diameter measured by 1H DOSY was assumed. Note that DCS systematically underestimates the particle diameter.

Dissolved CRaf

Dispersed <Au‐CRaf nanoparticles

D(1H DOSY) [m2 s−1]

(1.89±0.19)×10−10

(1.36±0.14)×10−10

d h(1H DOSY) [nm]

2.6±0.3

3.6±0.4

d h(DCS) [nm]

1.5±0.5

d core(HRTEM) [nm]

1.55±0.24

K D from ITC [μM]

1.3±0.1

5.0±0.1

binding ratio from ITC (peptide/protein)

0.84±0.01

0.75±0.03

binding enthalpy from ITC [kJ mol−1]

66±1

19±2

K D from FP [μM]

1.5±0.1

0.9±0.1

uptake by HeLa cells (24 h)

poor

good

Properties of dissolved CRaf and of CRAF‐conjugated ultrasmall gold nanoparticles from 1H DOSY, DCS, and HRTEM. An error of 10 % for the diffusion coefficient and the hydrodynamic diameter measured by 1H DOSY was assumed. Note that DCS systematically underestimates the particle diameter. Dissolved CRaf Dispersed D(1H DOSY) [m2 s−1] (1.89±0.19)×10−10 (1.36±0.14)×10−10 d h(1H DOSY) [nm] 2.6±0.3 3.6±0.4 d h(DCS) [nm] 1.5±0.5 d core(HRTEM) [nm] 1.55±0.24 K D from ITC [μM] 1.3±0.1 5.0±0.1 binding ratio from ITC (peptide/protein) 0.84±0.01 0.75±0.03 binding enthalpy from ITC [kJ mol−1] 66±1 19±2 K D from FP [μM] 1.5±0.1 0.9±0.1 uptake by HeLa cells (24 h) poor good

Conclusions

The targeting of the relevant protein 14‐3‐3 is possible with peptide‐functionalized ultrasmall gold nanoparticles. About 18 CRaf molecules can be covalently attached to a 1.55 nm ultrasmall gold nanoparticle. The binding ability of CRaf for 14‐3‐3σ remains unchanged as shown by isothermal titration calorimetry and fluorescence polarization spectroscopy. A particular advantage of the nanoparticles is their easy uptake by cells, opening up the possibility for protein targeting inside cells. This opens the pathway to target this protein inside cells with peptide‐conjugated ultrasmall gold nanoparticles. The major advantage of ultrasmall nanoparticles is the fact that they are smaller than a protein. This makes them suitable to address epitopes on a protein, in contrast to larger “conventional” nanoparticles with a diameter of 10 nm or more. These are much larger than a protein. In that case the protein would target the nanoparticle instead of the nanoparticle targeting the protein. With such a specific attachment of the surface of a protein, its function during protein–protein interaction (PPi) should be controllable. This is demonstrated here for 14‐3‐3, but easily transposable to other proteins of biological or medical relevance. Future studies should address the selectivity of CRaf‐functionalized nanoparticles by competitive binding studies in protein mixtures, ideally in living cells.

Experimental Section

Chemicals: An aqueous solution of tetrachloroauric(III)acid sodium salt (NaAuCl4, prepared by dissolving sodium tetrachloroaurate(III)dihydrate (NaAuCl4 ⋅ 2 H2O, Sigma‐Aldrich; 99 %) in hydrochloric acid (37 %) and ultrapure water) was used as gold source. Sodium borohydride (NaBH4, Sigma‐Aldrich; ≥96 %) in aqueous solution was used as reducing agent. For the protein‐interaction studies, the gold nanoparticles were conjugated either with the modified diphosphorylated CRaf peptide QHRY(pS)TPHAFTFNTSSPSEGSLSQRQRST(pS)TPNVH‐NH2 (residues 229–264; 95–96 %, 4192.63 g mol−1), harboring a cysteine replacing serine 246 at the indicated site (mutant S246 C), or with its FAM‐labeled derivate (5,6‐FAM)‐QHRY(pS)TPHAFTFNTSSPSEGSLSQRQRST(pS)TPNVH‐NH2 (residues 229–264; 5,6‐carboxyfluorescein fluorochrome conjugated to the C terminus; 97–98 %, 4551.34 g mol−1). It was important to minimize the formation of peptide disulfides during the synthesis (requiring work under inert gas atmosphere to avoid thiol oxidation) because disulfides are very difficult to remove from the nanoparticle dispersion after they have formed. The peptides were obtained from Caslo ApS (Denmark) as lyophilized chloride salts and used as received without further purification. In all experiments, ultrapure water with a specific resistivity of 18.2 MΩ (Purelab ultra instrument from ELGA) was used as solvent unless otherwise stated. All glassware was cleaned with boiling aqua regia and ultrapure water before all reactions involving nanoparticles. The functionalized gold nanoparticles were stored in HEPES buffer (25 mM HEPES, 100 mM NaCl, 2 mM MgCl2, 1 mM β‐mercaptoethanol, pH 7.4) or in potassium phosphate buffer (47 mM K2HPO4 and 3 mM KH2PO4, pH 8) after the synthesis. Nanoparticle synthesis: For the syntheses of peptide‐functionalized gold nanoparticles, we dissolved 0.1–1.4 μmol peptide in 0.13–1.87 mL degassed water and adjusted the pH to 5.5–5.7 with 0.1 M sodium hydroxide solution. The amounts of NaAuCl4 and NaBH4 were adapted according to the molar amount of peptide. It was necessary to work at low pH to minimize the thiol oxidation to disulfide is difficult to remove. Then, 1.4–19.5 μL NaAuCl4 (corresponding to 33–467 nmol gold) was added to the peptide solution under stirring. The color of the peptide/gold mixture rapidly changed from yellow to colorless, indicating that the gold ions were reduced from Au+III to Au+I. After 10 min of cooling the mixture in an ice bath, 1–10 μL of 0.2 M NaBH4 solution (freshly prepared with 4 °C cold water; corresponding to 0.1–2 μmol) was added and stirred for another hour to reduce Au+I to Au0. We carried out all syntheses under inert gas atmosphere (argon, Schlenk technique). The gold nanoparticles were purified by ultracentrifugation for 15 h at 30 000 rpm (66,000 g). After that, we obtained two phases, that is, the dark brown concentrated gold nanoparticle dispersion in the lower part of the centrifugation tube and a colorless phase of unreacted parent compounds and synthesis by‐products in the upper part. The colorless phase was carefully removed with a pipette. The nanoparticle dispersion was then purified by spin filtration with a PierceTM Protein Concentrator (PES, MWCO 10 kDA, 20 mL, Thermo Fisher) for 60 min at 4000 rpm (2000 g). Subsequently, the nanoparticles were multiply washed with HEPES buffer or potassium phosphate buffer by redispersion/spin filtration. The resulting volume of the purified and concentrated nanoparticle dispersion was about 50 to 60 μL. The nanoparticle dispersion was light‐brown. The absence of the typical red color due to surface plasmon resonance of larger gold nanoparticles (10 nm or more) confirms that all particles are ultrasmall‐ Protein expression and purification: 14‐3‐3σ was expressed with a His6‐tag in NiCo21(DE3) competent cells from a pPRoeX‐Htb vector in 2TY medium. The purification was carried out by affinity chromatography on nickel columns (HisTrap HP, 5 mL). The tags were cleaved with a TEV protease. The proteins were then loaded again on nickel columns to remove any uncleaved protein. A final purification step was performed by loading the proteins on a size‐exclusion chromatography column (HiLoad 26/600 Superdex 75 pg) equilibrated in 20 mM TRIS‐HCl buffer at pH 7.5, 150 mM NaCl, and 2 mM dithiothreitol (DTT). Before the ITC measurements, the protein was dialyzed with HEPES buffer (25 mM, pH 7.4). Cell uptake studies: The uptake of peptide‐functionalized ultrasmall gold nanoparticles was carried out with human cervix carcinoma cells (HeLa). HeLa cells were cultured in Dulbecco's modified Eagle's medium (DMEM), supplemented with 10 % fetal bovine serum (FBS), 100 U mL−1 penicillin, and 100 U mL−1 streptomycin at 37 °C in 5 % CO2 atmosphere. The cells were trypsinized and seeded in a glass‐bottom dish (ibidi μ‐Slide, Planegg, Germany) with 104 cells per well in 200 μL cell culture medium 24 h prior to the uptake studies. 20 μL of 125 μg mL−1 5,6‐FAM‐CRaf‐functionalized gold nanoparticles in 180 μL cell medium were added to the cells. The final gold nanoparticle concentration was 12.5 μg mL−1 per well, corresponding to 3.33⋅1014 nanoparticles per well. After incubation for 24 h, HeLa cells were washed 3 times with 200 μL phosphate‐buffered saline (PBS) and fixed with 100 μL 4 % aqueous paraformaldehyde (PFA) for 20 min at room temperature. The PFA was removed, and the cells were washed again three times with 200 μL PBS. For a better permeabilization of the dyes, the cells were treated with 150 μL of 0.1 % Triton X‐100 for 5 min and then washed twice with 200 μL PBS. Cell actin was stained by incubating the cells with 200 μL of 25 μg mL−1 Alexa‐Fluor 660‐phalloidin (Invitrogen) solution in PBS with 1 % bovine serum albumin for 20 min. After washing the cells with PBS, the cells were incubated for 15 min with 150 μL of a 1 μg mL−1 solution of Hoechst33342 (Life Technologies) in PBS for nucleus staining. Afterwards, the cells were washed 3 times with PBS and then analyzed with a Leica TCS SP8 confocal laser scanning microscope with a 63× NA1.2 water objective. Analytical methods: The gold concentration in the nanoparticle dispersion was determined by atomic absorption spectroscopy (AAS) with a Thermo Electron M‐Series spectrometer (graphite tube furnace according to DIN EN ISO/IEC 17025 : 2005) after dissolving the nanoparticles in aqua regia. Analytical disc centrifugation (differential centrifugal sedimentation; DCS) was performed with a CPS Instruments DC 24000 disc centrifuge (24 000 rpm). Two sucrose solutions (8 wt % and 24 wt%) formed a density gradient that was capped with 0.5 mL dodecane as stabilizing agent. The calibration standard was a poly(vinyl chloride) (PVC) latex in water with a particle size of 483 nm provided by CPS Instruments. A calibration was carried out prior to each run. A sample volume of 100 μL of dispersed nanoparticles was used. The recording time was about 6 h at the given centrifugation speed due to the small particle size. The density of elemental gold (19 300 kg m−3) was used for the computations. UV/Vis spectroscopy was performed with a Varian Cary 300 instrument from 200 to 800 nm after background solvent correction (HEPES buffer). Suprasil® quartz glass cuvettes with a sample volume of 500 μL were used. Fluorescence spectroscopy was performed with an Agilent Technologies Cary Eclipse Spectrophotometer in the range of 500 to 700 nm after background solvent correction (HEPES buffer). A 96‐well opaque flat bottom microplate with a sample volume of 300 μL was used. High‐resolution transmission electron microscopy was performed with an aberration‐corrected FEI Titan transmission electron microscope equipped with a Cs‐probe corrector (CEOS Company) and a point resolution of 0.08 nm operating at 300 kV. The nanoparticle concentrations were computed as follows (given here for a nanoparticle diameter of 1.55 nm and a gold concentration of 0.22 g L1): At a FAM‐CRAf concentration of 179 μM as obtained by UV/Vis spectroscopy, this corresponds to 1.08×1020 FAM‐Raf molecules per L, giving 1.08×1020/5.85×1018=18 FAM‐CRaf molecules per gold nanoparticle. NMR spectra were recorded in a 3 mm sample tube at 25 °C with a Bruker Avance III 700 MHz spectrometer, equipped with a 5 mm TCI 1H/13C/15N/D cryoprobe with z‐gradient. All gold nanoparticle dispersions and protein solutions were prepared in 200 μL in potassium phosphate buffer (47 mM K2HPO4 and 3 mM KH2PO4, pH 8) with 10 % D2O. The 1H DOSY pulse program from the Bruker library was equipped with a presaturation pulse to suppress the water signal. For the DOSY experiments, a diffusion time Δ of 100 ms was used, and the pulsed gradient duration δ was 3 ms for the free peptide and 4 ms for the peptide conjugated to the gold nanoparticles. The gradient strength was incrementally increased from 5 to 95 % of the maximum gradient strength (50.4 G cm−1 for a smoothed square gradient pulse) in 32 steps with a linear ramp to obtain a pseudo‐2D DOSY data set. The spectra were Fourier‐transformed, phased and integrated with the program versions 3.5 and 4.0.4 (Bruker). Plotting and fitting of the linearized diffusion data according to the Stejskal‐Tanner equation were performed with IGOR Pro (Wavemetrics, Inc.) with I as the signal intensity, I 0 as the signal intensity without gradient, γ as the gyromagnetic ratio of 1H, δ as the diffusion gradient pulse length, Δ as the diffusion delay, G as the gradient strength, and D as the translational diffusion coefficient. The Stejskal–Tanner plots of the well‐discernible proton signals of the peptides and of the peptide‐functionalized gold nanoparticles were first analyzed separately. Upon giving the same diffusion coefficient within the error margin, the relative intensities I/I 0 of all signals were averaged for dissolved peptide and nanoparticle‐conjugated peptide, respectively. Error bars of the averaged data points represent the standard deviation of these proton signals. The accuracy of the diffusion coefficient was determined by averaging the errors obtained from the 2D 1H DOSY spectrum. The hydrodynamic diameter was calculated by the Stokes‐Einstein equation with d H the hydrodynamic diameter, k the Boltzmann constant, T the temperature [K], η the dynamic viscosity of H2O at 25 °C, and D the translational diffusion coefficient. Isothermal titration calorimetry (ITC) was performed with a MicroCAL iTC2000 (Malvern Panalytical) instrument in HEPES buffer (25 mM, pH 7.4) at 25 °C. In the sample cell, 300 μL of 14‐3‐3σ (50 μM) was titrated with dissolved CRaf (1 mM), and 300 μL of 14‐3‐3σ (10 μM) was titrated with a dispersion of CRaf‐functionalized gold nanoparticles (gold nanoparticle concentration 13.9 μM; CRaf concentration 0.25 mM), respectively. The first injection volume was 0.4 μL with a mixing time of 0.8 s and a time interval of 180 s. Then, 17 injections of 2 μL aliquots of the nanoparticle dispersion followed with a mixing time of 4 s and a time interval of 200 s, respectively. The measurements were carried out with an initial delay of 180 s, a reference power of 5 μcal s−1, a stirring power of 750 rpm, and a filter period of 3 s. The dissociation constant (K D=1/K A), the molar binding stoichiometry (N), and the molar binding enthalpy (ΔH 0) were calculated by integrating the peaks obtained from enthalpy changes and presenting them in a Wiseman plot. A one‐set‐of‐sites specific‐binding model was assumed. The points 2 to 18 were fitted by the Hill Equation with H the molar enthalpy change per injection volume, H 0 the molar enthalpy change at the beginning of the measurement, H max the maximum measured molar enthalpy change, n the molar ratio of peptide to protein, and N the molar binding stoichiometry. Here, the point of inflection gives the molar binding stoichiometry, and the slope at the point of inflection gives K D. All data analyses were done with IGOR Pro. Fluorescence polarization spectroscopy (FP) was performed with a JASCO FP‐8300 fluorescence spectrometer in HEPES buffer (25 mM, pH 7.4) at 20 °C in Suprasil® quartz glass cuvettes with a sample volume of 60 μL. 14‐3‐3σ (50 μM) was added stepwise either to the FAM‐labeled peptide (20 nM) or to the CRaf‐functionalized gold nanoparticles (gold nanoparticle concentration 31 nM; CRaf concentration 560 nM). The resulting anisotropy at the emission wavelength of 520 nm was measured by exciting the sample with linearly polarized light at 500 nm. Fitting for the K D determination was done with IGOR Pro with the following quadratic binding equation for a one‐site specific binding model with r the anisotropy, r 0 the anisotropy without protein, r max the maximum anisotropy, [FL] the concentration of the titrant (fluorescently labeled CRaf), [P] the concentration of the added titrant (14‐3‐3σ), and K D the dissociation constant.

Conflict of interest

The authors declare no conflict of interest.
  47 in total

1.  Impaired binding of 14-3-3 to C-RAF in Noonan syndrome suggests new approaches in diseases with increased Ras signaling.

Authors:  Manuela Molzan; Benjamin Schumacher; Corinna Ottmann; Angela Baljuls; Lisa Polzien; Michael Weyand; Philipp Thiel; Rolf Rose; Micheline Rose; Philipp Kuhenne; Markus Kaiser; Ulf R Rapp; Jürgen Kuhlmann; Christian Ottmann
Journal:  Mol Cell Biol       Date:  2010-08-02       Impact factor: 4.272

2.  Rapid measurement of binding constants and heats of binding using a new titration calorimeter.

Authors:  T Wiseman; S Williston; J F Brandts; L N Lin
Journal:  Anal Biochem       Date:  1989-05-15       Impact factor: 3.365

3.  Quantitative analysis of thiolated ligand exchange on gold nanoparticles monitored by 1H NMR spectroscopy.

Authors:  Ashley M Smith; Lauren E Marbella; Kathryn A Johnston; Michael J Hartmann; Scott E Crawford; Lisa M Kozycz; Dwight S Seferos; Jill E Millstone
Journal:  Anal Chem       Date:  2015-02-06       Impact factor: 6.986

4.  Ultrasmall gold nanoparticles (2 nm) can penetrate and enter cell nuclei in an in vitro 3D brain spheroid model.

Authors:  Viktoriya Sokolova; Goodwell Nzou; Selina B van der Meer; Tatjana Ruks; Marc Heggen; Kateryna Loza; Nina Hagemann; Florian Murke; Bernd Giebel; Dirk M Hermann; Anthony J Atala; Matthias Epple
Journal:  Acta Biomater       Date:  2020-05-13       Impact factor: 8.947

5.  Inhibition of HIV fusion with multivalent gold nanoparticles.

Authors:  Mary-Catherine Bowman; T Eric Ballard; Christopher J Ackerson; Daniel L Feldheim; David M Margolis; Christian Melander
Journal:  J Am Chem Soc       Date:  2008-05-13       Impact factor: 15.419

6.  Targeting the Surface of the Protein 14-3-3 by Ultrasmall (1.5 nm) Gold Nanoparticles Carrying the Specific Peptide CRaf.

Authors:  Tatjana Ruks; Kateryna Loza; Marc Heggen; Christian Ottmann; Peter Bayer; Christine Beuck; Matthias Epple
Journal:  Chembiochem       Date:  2021-01-28       Impact factor: 3.164

7.  ANIA: ANnotation and Integrated Analysis of the 14-3-3 interactome.

Authors:  Michele Tinti; Fábio Madeira; Gavuthami Murugesan; Gerta Hoxhaj; Rachel Toth; Carol Mackintosh
Journal:  Database (Oxford)       Date:  2014-02-05       Impact factor: 3.451

8.  Binding and Uptake into Human Hepatocellular Carcinoma Cells of Peptide-Functionalized Gold Nanoparticles.

Authors:  Satadru Jha; Federico Ramadori; Santina Quarta; Alessandra Biasiolo; Enrica Fabris; Paola Baldan; Gaetano Guarino; Mariagrazia Ruvoletto; Gianmarco Villano; Cristian Turato; Angelo Gatta; Fabrizio Mancin; Patrizia Pontisso; Paolo Scrimin
Journal:  Bioconjug Chem       Date:  2016-11-02       Impact factor: 4.774

9.  Supramolecular Chemistry Targeting Proteins.

Authors:  Sam van Dun; Christian Ottmann; Lech-Gustav Milroy; Luc Brunsveld
Journal:  J Am Chem Soc       Date:  2017-09-28       Impact factor: 15.419

Review 10.  Modulators of 14-3-3 Protein-Protein Interactions.

Authors:  Loes M Stevers; Eline Sijbesma; Maurizio Botta; Carol MacKintosh; Tomas Obsil; Isabelle Landrieu; Ylenia Cau; Andrew J Wilson; Anna Karawajczyk; Jan Eickhoff; Jeremy Davis; Michael Hann; Gavin O'Mahony; Richard G Doveston; Luc Brunsveld; Christian Ottmann
Journal:  J Med Chem       Date:  2017-10-19       Impact factor: 7.446

View more
  3 in total

1.  Targeting the Surface of the Protein 14-3-3 by Ultrasmall (1.5 nm) Gold Nanoparticles Carrying the Specific Peptide CRaf.

Authors:  Tatjana Ruks; Kateryna Loza; Marc Heggen; Christian Ottmann; Peter Bayer; Christine Beuck; Matthias Epple
Journal:  Chembiochem       Date:  2021-01-28       Impact factor: 3.164

Review 2.  Can super-resolution microscopy become a standard characterization technique for materials chemistry?

Authors:  Shikha Dhiman; Teodora Andrian; Beatriz Santiago Gonzalez; Marrit M E Tholen; Yuyang Wang; Lorenzo Albertazzi
Journal:  Chem Sci       Date:  2021-12-01       Impact factor: 9.825

Review 3.  Biomolecular interactions of ultrasmall metallic nanoparticles and nanoclusters.

Authors:  Alioscka A Sousa; Peter Schuck; Sergio A Hassan
Journal:  Nanoscale Adv       Date:  2021-04-28
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.