| Literature DB >> 33274236 |
Yuyang Wang1,2, Tongtong Liu1, Fang Ma1, Xiaoguang Lu1, Huimin Mao1, Weie Zhou3, Liping Yang1, Ping Li3, Yongli Zhan1.
Abstract
BACKGROUND: Diabetic kidney disease (DKD) poses a major public-health burden globally. Tripterygium wilfordii Hook F (TwHF) is a widely employed herbal medicine in decreasing albuminuria among diabetic patients. However, a holistic network pharmacology strategy to investigate the active components and therapeutic mechanism underlying DKD is still unavailable.Entities:
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Year: 2020 PMID: 33274236 PMCID: PMC7695487 DOI: 10.1155/2020/2421631
Source DB: PubMed Journal: J Diabetes Res Impact factor: 4.011
Figure 1The whole framework for TwHF against DKD.
Basic information of active components in TwHF.
| Mol ID | Compound | MW | OB (%) | DL | Targets |
|---|---|---|---|---|---|
| MOL000422 | Kaempferol | 286.25 | 41.88 | 0.24 | 46 |
| MOL000358 | Beta-sitosterol | 414.79 | 36.91 | 0.75 | 39 |
| MOL000449 | Stigmasterol | 412.77 | 43.83 | 0.76 | 38 |
| MOL003231 | Triptoditerpenic acid B | 328.49 | 40.02 | 0.36 | 33 |
| MOL003196 | Tryptophenolide | 312.44 | 48.5 | 0.44 | 29 |
| MOL003229 | Triptinin B | 314.46 | 34.73 | 0.32 | 29 |
| MOL003184 | 81827-74-9 | 342.47 | 45.42 | 0.53 | 27 |
| MOL003280 | Triptonolide | 326.42 | 49.51 | 0.49 | 27 |
| MOL000296 | Hederagenin | 414.79 | 36.91 | 0.75 | 26 |
| MOL003217 | Isoxanthohumol | 354.43 | 56.81 | 0.39 | 26 |
| MOL005828 | Nobiletin flavones | 402.43 | 61.67 | 0.52 | 25 |
| MOL003248 | Triptonoterpene | 300.48 | 48.57 | 0.28 | 24 |
| MOL003185 | (1R,4aR,10aS)-5-hydroxy-1-(hydroxymethyl)-7-isopropyl-8-methoxy-1,4a-dimethyl-4,9,10,10a-tetrahydro-3H-phenanthren-2-one | 346.51 | 48.84 | 0.38 | 23 |
| MOL003199 | 5,8-Dihydroxy-7-(4-hydroxy-5-methyl-coumarin-3)-coumarin | 352.31 | 61.85 | 0.54 | 22 |
| MOL003283 | (2R,3R,4S)-4-(4-hydroxy-3-methoxy-phenyl)-7-methoxy-2,3-dimethylol-tetralin-6-ol | 360.44 | 66.51 | 0.39 | 22 |
Figure 2The chemical structure of the ten representative compounds in TwHF.
Figure 3Compound-compound target network of targets in TwHF. The yellow hexagon stands for compounds in TwHF. The nodes represented target genes of TwHF, in which pink nodes stand for common target of TwHF-DKD, and red nodes were employed to represent compound targets not related to DKD. The lines stand for interactions between compounds and target nodes.
Figure 4Compound-DKD PPI network and its clusters. (a) TwHF target-DKD target PPI network comprised of 88 nodes and 547 edges. The nodes stand for genes, and the lines stand for the interactions between a pair of target genes; The node color was redder as the degree value increased. (b–f) Clusters of compound-DKD PPI network. Five clusters were obtained in compound-DKD PPI network, and (b–f) stand for clusters 1-5.
Cluster of compound-DKD PPI network.
| Cluster | Score | Nodes | Edges | Genes |
|---|---|---|---|---|
| 1 | 11.29 | 15 | 79 | AR, MAPK8, JUN, VEGFA, NR3C1, ESR1, MAPK14, NOS2, HSP90AA1, PGR, HMOX1, CD86, PTGS2, VCAM1, and CXCR4 |
| 2 | 6 | 13 | 36 | SLC6A4, MAOA, MAOB, OPRD1, ADRA1D, CYP3A4, CHRM3, SLC6A2, CHRM2, ADRA1B, SLC6A3, ADRA1A, and C3 |
| 3 | 4.2 | 11 | 21 | AHR, SELE, PLAU, NCOA2, PPARG, NCOA1, MMP1, IL2, CD80, ESR2, and KDR |
| 4 | 3.56 | 10 | 16 | ADH1C, GSTP1, CHRM1, DRD1, ACHE, CHRM5, PON1, ADRB2, ADRB1, and ADH1B |
| 5 | 3.33 | 4 | 5 | BCL2, RXRA, PPARD, and RXRB |
Figure 5KEGG pathway analysis of 5 clusters. The color of nodes was described in a gradient from blue to red according to the descending order of the P value. GeneRatio equaled to gene count enriched in pathway/total gene count enriched in the cluster.
Figure 6The potential key signaling pathways and involved genes of TwHF for treating DKD.