Literature DB >> 33268388

John W. (Jan) Drake: A Biochemical View of a Geneticist Par Excellence.

Linda J Reha-Krantz1, Myron F Goodman2.   

Abstract

John W. Drake died 02-02-2020, a mathematical palindrome, which he would have enjoyed, given his love of "word play and logic," as stated in his obituary and echoed by his family, friends, students, and colleagues. Many aspects of Jan's career have been reviewed previously, including his early years as a Caltech graduate student, and when he was editor-in-chief, with the devoted assistance of his wife Pam, of this journal for 15 impactful years. During his editorship, he raised the profile of GENETICS as the flagship journal of the Genetics Society of America and inspired and contributed to the creation of the Perspectives column, coedited by Jim Crow and William Dove. At the same time, Jan was building from scratch the Laboratory of Molecular Genetics on the newly established Research Triangle Park campus of the National Institute of Environmental Health Science, which he headed for 30 years. This commentary offers a unique perspective on Jan's legacy; we showcase Jan's 1969 benchmark discovery of antimutagenic T4 DNA polymerases and the research by three generations (and counting) of scientists whose research stems from that groundbreaking discovery. This is followed by a brief discussion of Jan's passion: his overriding interest in analyzing mutation rates across species. Several anecdotal stories are included to bring alive one of Jan's favorite phrases, "to think like a geneticist." We feature Jan's genetical approach to mutation studies, along with the biochemistry of DNA polymerase function, our area of expertise. But in the end, we acknowledge, as Jan did, that genetics, also known as in vivo biochemistry, prevails.
Copyright © 2020 by the Genetics Society of America.

Entities:  

Keywords:  bacteriophage T4 DNA polymerase; mutation rates; mutation studies in vivo and in vitro; replication fidelity

Mesh:

Year:  2020        PMID: 33268388      PMCID: PMC7768258          DOI: 10.1534/genetics.120.303813

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  83 in total

1.  Properties of bacteriophage T4 proteins deficient in replication repair.

Authors:  Farid A Kadyrov; John W Drake
Journal:  J Biol Chem       Date:  2003-04-14       Impact factor: 5.157

Review 2.  Spontaneous mutation.

Authors:  J W Drake
Journal:  Annu Rev Genet       Date:  1991       Impact factor: 16.830

Review 3.  DNA polymerase fidelity: from genetics toward a biochemical understanding.

Authors:  M F Goodman; K D Fygenson
Journal:  Genetics       Date:  1998-04       Impact factor: 4.562

4.  The spectrum of acridine resistant mutants of bacteriophage T4 reveals cryptic effects of the tsL141 DNA polymerase allele on spontaneous mutagenesis.

Authors:  F J Wang; L S Ripley
Journal:  Genetics       Date:  1998-04       Impact factor: 4.562

5.  Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69.

Authors:  J Wang; A K Sattar; C C Wang; J D Karam; W H Konigsberg; T A Steitz
Journal:  Cell       Date:  1997-06-27       Impact factor: 41.582

6.  An antimutator deoxyribonucleic acid polymerase. II. In vitro and in vivo studies of its temperature sensitivity.

Authors:  K Y Lo; M J Bessman
Journal:  J Biol Chem       Date:  1976-04-25       Impact factor: 5.157

Review 7.  Deoxyribonucleotide metabolism, mutagenesis and cancer.

Authors:  Christopher K Mathews
Journal:  Nat Rev Cancer       Date:  2015-09       Impact factor: 60.716

8.  A single mutation in bacteriophage T4 DNA polymerase (A737V, tsL141) decreases its processivity as a polymerase and increases its processivity as a 3'-->5' exonuclease.

Authors:  P Spacciapoli; N G Nossal
Journal:  J Biol Chem       Date:  1994-01-07       Impact factor: 5.157

9.  Variation in mutation rates caused by RB69pol fidelity mutants can be rationalized on the basis of their kinetic behavior and crystal structures.

Authors:  Shuangluo Xia; Mina Wang; Harold R Lee; Arjun Sinha; Gregor Blaha; Thomas Christian; Jimin Wang; William Konigsberg
Journal:  J Mol Biol       Date:  2011-01-07       Impact factor: 5.469

10.  Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP.

Authors:  H Pelletier; M R Sawaya; A Kumar; S H Wilson; J Kraut
Journal:  Science       Date:  1994-06-24       Impact factor: 47.728

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