| Literature DB >> 33260355 |
Oleg V Mikhailov1, Denis V Chachkov2.
Abstract
Based on the results of a quantum chemical calculation using the DFT method with the OPBE/TZVP and B3PW91/TZVP levels, the possibility of the existence of three cobalt heteroligand complexes containing in the inner coordination sphere porphyrazine, di[benzo]- and tetra[benzo]porphyrazine, and two oxygen (O2-) ions with probable oxidation state VI of Co, which is unknown for this element at the present time, was shown. Data on the structural parameters are presented. It was shown that CoN4 chelate nodes as well as all metal-chelate and non-chelate cycles in each of these complexes, were strictly planar. Besides, the bond angles formed by two donor nitrogen atoms and a Co atom were close or equal to 90°, while the bond angles formed by donor atoms N, Co, and O, in most cases, albeit insignificantly, differed from this value. Good agreement between the calculated data obtained using the above two versions of the DFT method was found. Standard thermodynamic parameters of formation (standard enthalpy ΔH0f, 298, entropy S0f, 298 and Gibbs's energy ΔG0f, 298) for the indicated complexes were presented too.Entities:
Keywords: DFT method; benzo-derivative; cobalt; macrocyclic chelate; oxidation state VI; oxo ligand; porphyrazine
Year: 2020 PMID: 33260355 PMCID: PMC7730303 DOI: 10.3390/ijms21239085
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Bond lengths and bond angles in the nickel complexes of types I, II, and III calculated by OPBE/TZVP and B3PW91/TZVP methods.
| Complex | [CoL1(O)2] | [CoL2(O)2] | [CoL3(O)2] | |||
|---|---|---|---|---|---|---|
| Structural parameter | Calculated by DFT | Calculated by DFT | Calculated by DFT | |||
| OPBE/TZVP | B3PW91/TZVP | OPBE/TZVP | B3PW91/TZVP | OPBE/TZVP | B3PW91/TZVP | |
| Co–N bond lengths in chelate node MN4, | ||||||
| Co1N1 | 192.2 | 192.2 | 195.2 | 193.2 | 193.6 | 194.0 |
| Co1N2 | 193.2 | 191.5 | 194.8 | 192.4 | 193.6 | 195.3 |
| Co1N3 | 194.2 | 192.2 | 195.2 | 193.2 | 193.6 | 194.0 |
| Co1N4 | 193.2 | 191.5 | 192.8 | 192.4 | 193.6 | 195.3 |
| Co–O bond lengths, | ||||||
| Co1O1 | 168.9 | 173.1 | 168.7 | 174.5 | 175.4 | 171.5 |
| Co1O2 | 168.9 | 176.7 | 168.7 | 174.5 | 175.4 | 179.0 |
| C–N bond lengths in 6-numbered chelate rings, | ||||||
| N1C3 | 136.4 | 135.4 | 136.7 | 135.7 | 136.2 | 136.8 |
| N1C4 | 136.4 | 135.4 | 136.6 | 135.7 | 136.2 | 136.8 |
| N2C1 | 136.3 | 135.7 | 136.7 | 135.1 | 136.2 | 136.3 |
| N2C2 | 136.2 | 135.7 | 136.7 | 135.1 | 136.2 | 136.3 |
| N3C7 | 136.7 | 135.4 | 136.6 | 135.7 | 136.2 | 136.8 |
| N3C8 | 136.7 | 135.4 | 136.7 | 135.7 | 136.2 | 136.8 |
| N4C5 | 136.2 | 135.7 | 136.4 | 135.1 | 136.2 | 136.3 |
| N4C6 | 136.3 | 135.7 | 136.4 | 135.1 | 136.2 | 136.3 |
| N5C2 | 132.4 | 131.3 | 132.3 | 131.8 | 132.0 | 131.3 |
| N5C3 | 132.4 | 132.7 | 131.9 | 131.8 | 132.0 | 131.3 |
| N6C6 | 132.4 | 131.3 | 132.4 | 131.8 | 132.0 | 131.3 |
| N6C7 | 132.3 | 132.7 | 131.9 | 131.8 | 132.0 | 131.3 |
| N7C4 | 132.4 | 132.7 | 131.9 | 131.8 | 132.0 | 131.3 |
| N7C5 | 132.4 | 131.3 | 132.4 | 131.8 | 132.0 | 131.3 |
| N8C1 | 132.4 | 131.3 | 132.3 | 131.8 | 132.0 | 131.3 |
| N8C8 | 132.3 | 132.7 | 131.9 | 131.8 | 132.0 | 131.3 |
| C–C bond lengths in 5-numbered chelate ring (N1C4C9C10C3), | ||||||
| C4C9 | 145.2 | 146.2 | 145.8 | 146.4 | 146.4 | 145.0 |
| C9C10 | 135.7 | 134.4 | 140.2 | 139.4 | 139.9 | 139.7 |
| C10C3 | 145.2 | 146.2 | 145.8 | 146.4 | 146.4 | 145.0 |
| Bond angles in chelate node CoN4, | ||||||
| (N1Co1N2) | 90.1 | 90.0 | 89.9 | 90.0 | 90.0 | 90.0 |
| (N2Co1N3) | 89.9 | 89.9 | 89.9 | 90.0 | 90.0 | 90.0 |
| (N3Co1N4) | 89.9 | 90.0 | 90.1 | 90.0 | 90.0 | 90.0 |
| (N4Co1N1) | 90.1 | 89.9 | 90.1 | 90.0 | 90.0 | 90.0 |
| Bond angles sum ( | 360.0 | 359.8 | 360.0 | 360.0 | 360.0 | 360.0 |
| Non-bond angles between N atoms in N4 grouping, | ||||||
| (N1N2N3) | 90.0 | 90.2 | 90.2 | 90.2 | 90.0 | 89.6 |
| (N2N3N4) | 89.8 | 89.7 | 89.6 | 89.8 | 90.0 | 90.4 |
| (N3N4N1) | 90.0 | 90.2 | 90.6 | 90.2 | 90.0 | 89.6 |
| (N4N1N2) | 90.2 | 89.7 | 89.6 | 89.8 | 90.0 | 90.4 |
| Non-bond angles sum (NBAS), | 360.0 | 359.8 | 360.0 | 360.0 | 360.0 | 360.0 |
| Bond angles in 6-numbered chelate ring (Co1N1C4N7C5N4), | ||||||
| (Co1N1C4) | 126.1 | 126.3 | 125.3 | 125.6 | 125.8 | 125.5 |
| (N1C4N7) | 128.3 | 127.9 | 128.4 | 128.4 | 128.5 | 128.3 |
| (C4N7C5) | 121.4 | 121.1 | 121.7 | 121.7 | 121.4 | 122.6 |
| (N7C5N4) | 128.1 | 128.4 | 128.3 | 128.0 | 128.5 | 128.1 |
| (C5N4Co1) | 126.1 | 126.3 | 126.2 | 126.3 | 125.8 | 125.5 |
| (N4Co1N1) | 90.0 | 89.9 | 90.1 | 90.0 | 90.0 | 90.0 |
| Bond angles sum (BAS61), | 720.0 | 719.9 | 720.0 | 720.0 | 720.0 | 720.0 |
| Bond angles in 6-numbered chelate ring (Co1N4C6N6C7N3), | ||||||
| (Co1N4C6) | 126.1 | 126.3 | 126.2 | 126.3 | 125.8 | 125.6 |
| (N4C6N6) | 128.5 | 128.4 | 128.3 | 128.0 | 128.5 | 128.0 |
| (C6N6C7) | 121.4 | 121.1 | 121.7 | 121.7 | 121.4 | 122.6 |
| (N6C7N3) | 128.2 | 127.9 | 128.4 | 128.4 | 128.5 | 128.2 |
| (C7N3Co1) | 125.9 | 126.3 | 125.3 | 125.6 | 125.8 | 125.6 |
| (N3Co1N4) | 89.9 | 89.9 | 90.1 | 90.0 | 90.0 | 90.0 |
| Bond angles sum (BAS62), | 720.0 | 719.9 | 720.0 | 720.0 | 720.0 | 720.0 |
| Bond angles in 5-numbered ring (C3N1C4C9C10), | ||||||
| (C3N1C4) | 107.8 | 107.3 | 109.3 | 108.8 | 108.4 | 108.9 |
| (N1C4C9) | 109.1 | 109.7 | 108.9 | 109.5 | 109.7 | 109.0 |
| (C4C9C10) | 107.0 | 106.6 | 106.4 | 106.1 | 106.1 | 106.6 |
| (C9C10C3) | 107.0 | 106.6 | 106.5 | 106.1 | 106.1 | 106.6 |
| (C10C3N1) | 109.1 | 109.7 | 108.9 | 109.5 | 109.7 | 108.9 |
| Bond angles sum (BAS51), | 540.0 | 539.9 | 540.0 | 540.0 | 540.0 | 540.0 |
| Bond angles in 5-numbered ring (C1N2C2C12C11), | ||||||
| (C1N2C2) | 107.8 | 107.5 | 108.0 | 107.4 | 108.4 | 108.9 |
| (N2C2C12) | 109.2 | 109.4 | 108.9 | 109.8 | 109.7 | 109.1 |
| (C2C12C11) | 106.9 | 106.8 | 107.1 | 106.5 | 106.1 | 106.4 |
| (C12C11C1) | 107.0 | 106.8 | 107.1 | 106.5 | 106.1 | 106.4 |
| (C11C1N2) | 109.1 | 109.4 | 108.9 | 109.8 | 109.7 | 109.1 |
| Bond angles sum (BAS52), | 540.0 | 539.9 | 540.0 | 540.0 | 540.0 | 540.0 |
| Bond angles between O, Co and N atoms, | ||||||
| O1Co1N1 | 94.9 | 91.1 | 90.0 | 90.0 | 90.0 | 91.5 |
| O1Co1N2 | 90.0 | 92.7 | 85.0 | 90.0 | 90.0 | 91.0 |
| O1Co1N3 | 85.1 | 91.1 | 90.0 | 90.0 | 90.0 | 91.5 |
| O1Co1N4 | 90.0 | 92.7 | 95.0 | 90.0 | 90.0 | 91.0 |
| O2Co1N1 | 94.9 | 88.9 | 90.0 | 90.0 | 90.0 | 88.5 |
| O2Co1N2 | 90.0 | 87.3 | 85.0 | 90.0 | 90.0 | 89.0 |
| O2Co1N3 | 85.1 | 88.9 | 90.0 | 90.0 | 90.0 | 88.5 |
| O2Co1N4 | 90.0 | 87.3 | 85.0 | 90.0 | 90.0 | 89.0 |
| Bond angles between Co and two O atoms, | ||||||
| O1Co1O2 | 170.1 | 180.0 | 169.9 | 180.0 | 180.0 | 180.0 |
Figure 1Molecular structure of the [CoL1(O)2] complex obtained as a result of DFT B3PW91/TZVP quantum-chemical calculation.
Figure 2Molecular structure of the [CoL2(O)2] complex obtained as a result of DFT B3PW91/TZVP quantum-chemical calculation.
Figure 3Molecular structure of the [CoL3(O)2] complex obtained as a result of DFT B3PW91/TZVP quantum-chemical calculation.
NBO analysis data for the cobalt complexes of types I, II, and III.
| Complex | Effective Charge of Atom, in Units of Electron Charge (ē) | <S**2> | |||
|---|---|---|---|---|---|
| Co1 | N1 (N3) | N2 (N4) | O1 (O2) | ||
| [Co | +0.0647 | −0.2989 (−0.2938) | −0.2905 (−0.2905) | −0.0895 (−0.0895) | 0.7609 |
| [Co | +0.0859 | −0.2699 (−0.2699) | −0.2982 (−0.3065) | −0.1673 (−0.1673) | 0.7627 |
| [Co | +0.0881 | −0.2669 (−02669) | −0.2669 (−02669) | −0.4071 (−0.4071) | 3.7715 |
Figure 4The pictures of spin density distribution in the [CoL1(O)2] (a), [CoL2(O)2] (b), and [CoL3(O)2] (c) complexes obtained by using the DFT OPBE/TZVP method.
Standard thermodynamic parameters of formation (ΔH0, 298, S0, 298 and ΔG0, 298) for the cobalt complexes of types I–III.
| Complex | Δ | Δ | |
|---|---|---|---|
| [Co | 616.3 | 759.8 | 842.1 |
| [Co | 567.7 | 949.8 | 814.5 |
| [Co | 530.1 | 1168.9 | 789.3 |