Literature DB >> 33259802

Histone H3.3G34-Mutant Interneuron Progenitors Co-opt PDGFRA for Gliomagenesis.

Carol C L Chen1, Shriya Deshmukh2, Selin Jessa3, Djihad Hadjadj1, Véronique Lisi1, Augusto Faria Andrade1, Damien Faury4, Wajih Jawhar1, Rola Dali5, Hiromichi Suzuki6, Manav Pathania7, Deli A8, Frank Dubois9, Eleanor Woodward9, Steven Hébert10, Marie Coutelier10, Jason Karamchandani11, Steffen Albrecht12, Sebastian Brandner13, Nicolas De Jay10, Tenzin Gayden1, Andrea Bajic1, Ashot S Harutyunyan4, Dylan M Marchione14, Leonie G Mikael4, Nikoleta Juretic4, Michele Zeinieh1, Caterina Russo4, Nicola Maestro15, Angelia V Bassenden16, Peter Hauser17, József Virga18, Laszlo Bognar19, Almos Klekner19, Michal Zapotocky20, Ales Vicha20, Lenka Krskova21, Katerina Vanova20, Josef Zamecnik21, David Sumerauer20, Paul G Ekert22, David S Ziegler23, Benjamin Ellezam24, Mariella G Filbin25, Mathieu Blanchette26, Jordan R Hansford22, Dong-Anh Khuong-Quang27, Albert M Berghuis16, Alexander G Weil28, Benjamin A Garcia14, Livia Garzia29, Stephen C Mack30, Rameen Beroukhim31, Keith L Ligon32, Michael D Taylor6, Pratiti Bandopadhayay33, Christoph Kramm34, Stefan M Pfister35, Andrey Korshunov36, Dominik Sturm37, David T W Jones38, Paolo Salomoni39, Claudia L Kleinman40, Nada Jabado41.   

Abstract

Histone H3.3 glycine 34 to arginine/valine (G34R/V) mutations drive deadly gliomas and show exquisite regional and temporal specificity, suggesting a developmental context permissive to their effects. Here we show that 50% of G34R/V tumors (n = 95) bear activating PDGFRA mutations that display strong selection pressure at recurrence. Although considered gliomas, G34R/V tumors actually arise in GSX2/DLX-expressing interneuron progenitors, where G34R/V mutations impair neuronal differentiation. The lineage of origin may facilitate PDGFRA co-option through a chromatin loop connecting PDGFRA to GSX2 regulatory elements, promoting PDGFRA overexpression and mutation. At the single-cell level, G34R/V tumors harbor dual neuronal/astroglial identity and lack oligodendroglial programs, actively repressed by GSX2/DLX-mediated cell fate specification. G34R/V may become dispensable for tumor maintenance, whereas mutant-PDGFRA is potently oncogenic. Collectively, our results open novel research avenues in deadly tumors. G34R/V gliomas are neuronal malignancies where interneuron progenitors are stalled in differentiation by G34R/V mutations and malignant gliogenesis is promoted by co-option of a potentially targetable pathway, PDGFRA signaling. Crown
Copyright © 2020. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  GSX2; H3.3 G34R/V; PDGFRA; cell-of-origin; chromatin conformation; gliomas; interneuron progenitors; oncohistones; pediatric cancer; single-cell transcriptome

Mesh:

Substances:

Year:  2020        PMID: 33259802      PMCID: PMC7791404          DOI: 10.1016/j.cell.2020.11.012

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  98 in total

1.  featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.

Authors:  Yang Liao; Gordon K Smyth; Wei Shi
Journal:  Bioinformatics       Date:  2013-11-13       Impact factor: 6.937

2.  New Brain Tumor Entities Emerge from Molecular Classification of CNS-PNETs.

Authors:  Dominik Sturm; Brent A Orr; Umut H Toprak; Volker Hovestadt; David T W Jones; David Capper; Martin Sill; Ivo Buchhalter; Paul A Northcott; Irina Leis; Marina Ryzhova; Christian Koelsche; Elke Pfaff; Sariah J Allen; Gnanaprakash Balasubramanian; Barbara C Worst; Kristian W Pajtler; Sebastian Brabetz; Pascal D Johann; Felix Sahm; Jüri Reimand; Alan Mackay; Diana M Carvalho; Marc Remke; Joanna J Phillips; Arie Perry; Cynthia Cowdrey; Rachid Drissi; Maryam Fouladi; Felice Giangaspero; Maria Łastowska; Wiesława Grajkowska; Wolfram Scheurlen; Torsten Pietsch; Christian Hagel; Johannes Gojo; Daniela Lötsch; Walter Berger; Irene Slavc; Christine Haberler; Anne Jouvet; Stefan Holm; Silvia Hofer; Marco Prinz; Catherine Keohane; Iris Fried; Christian Mawrin; David Scheie; Bret C Mobley; Matthew J Schniederjan; Mariarita Santi; Anna M Buccoliero; Sonika Dahiya; Christof M Kramm; André O von Bueren; Katja von Hoff; Stefan Rutkowski; Christel Herold-Mende; Michael C Frühwald; Till Milde; Martin Hasselblatt; Pieter Wesseling; Jochen Rößler; Ulrich Schüller; Martin Ebinger; Jens Schittenhelm; Stephan Frank; Rainer Grobholz; Istvan Vajtai; Volkmar Hans; Reinhard Schneppenheim; Karel Zitterbart; V Peter Collins; Eleonora Aronica; Pascale Varlet; Stephanie Puget; Christelle Dufour; Jacques Grill; Dominique Figarella-Branger; Marietta Wolter; Martin U Schuhmann; Tarek Shalaby; Michael Grotzer; Timothy van Meter; Camelia-Maria Monoranu; Jörg Felsberg; Guido Reifenberger; Matija Snuderl; Lynn Ann Forrester; Jan Koster; Rogier Versteeg; Richard Volckmann; Peter van Sluis; Stephan Wolf; Tom Mikkelsen; Amar Gajjar; Kenneth Aldape; Andrew S Moore; Michael D Taylor; Chris Jones; Nada Jabado; Matthias A Karajannis; Roland Eils; Matthias Schlesner; Peter Lichter; Andreas von Deimling; Stefan M Pfister; David W Ellison; Andrey Korshunov; Marcel Kool
Journal:  Cell       Date:  2016-02-25       Impact factor: 41.582

3.  SomaticSniper: identification of somatic point mutations in whole genome sequencing data.

Authors:  David E Larson; Christopher C Harris; Ken Chen; Daniel C Koboldt; Travis E Abbott; David J Dooling; Timothy J Ley; Elaine R Mardis; Richard K Wilson; Li Ding
Journal:  Bioinformatics       Date:  2011-12-06       Impact factor: 6.937

4.  A method for stable transgenesis of radial glia lineage in rat neocortex by piggyBac mediated transposition.

Authors:  Fuyi Chen; Joseph LoTurco
Journal:  J Neurosci Methods       Date:  2012-04-11       Impact factor: 2.390

5.  H3.3 G34R mutations in pediatric primitive neuroectodermal tumors of central nervous system (CNS-PNET) and pediatric glioblastomas: possible diagnostic and therapeutic implications?

Authors:  Marco Gessi; Gerrit H Gielen; Jennifer Hammes; Evelyn Dörner; Anja Zur Mühlen; Andreas Waha; Torsten Pietsch
Journal:  J Neurooncol       Date:  2013-01-26       Impact factor: 4.130

6.  Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs.

Authors:  Christopher T Saunders; Wendy S W Wong; Sajani Swamy; Jennifer Becq; Lisa J Murray; R Keira Cheetham
Journal:  Bioinformatics       Date:  2012-05-10       Impact factor: 6.937

7.  The Encyclopedia of DNA elements (ENCODE): data portal update.

Authors:  Carrie A Davis; Benjamin C Hitz; Cricket A Sloan; Esther T Chan; Jean M Davidson; Idan Gabdank; Jason A Hilton; Kriti Jain; Ulugbek K Baymuradov; Aditi K Narayanan; Kathrina C Onate; Keenan Graham; Stuart R Miyasato; Timothy R Dreszer; J Seth Strattan; Otto Jolanki; Forrest Y Tanaka; J Michael Cherry
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

8.  Characterizing and targeting PDGFRA alterations in pediatric high-grade glioma.

Authors:  Carl Koschmann; Daniel Zamler; Alan MacKay; Dan Robinson; Yi-Mi Wu; Robert Doherty; Bernard Marini; Dustin Tran; Hugh Garton; Karin Muraszko; Patricia Robertson; Marcia Leonard; Lili Zhao; Dale Bixby; Luke Peterson; Sandra Camelo-Piragua; Chris Jones; Rajen Mody; Pedro R Lowenstein; Maria G Castro
Journal:  Oncotarget       Date:  2016-10-04

9.  Childhood cerebellar tumours mirror conserved fetal transcriptional programs.

Authors:  Maria C Vladoiu; Ibrahim El-Hamamy; Laura K Donovan; Nada Jabado; Lincoln Stein; Michael D Taylor; Hamza Farooq; Borja L Holgado; Yogi Sundaravadanam; Vijay Ramaswamy; Liam D Hendrikse; Sachin Kumar; Stephen C Mack; John J Y Lee; Vernon Fong; Kyle Juraschka; David Przelicki; Antony Michealraj; Patryk Skowron; Betty Luu; Hiromichi Suzuki; A Sorana Morrissy; Florence M G Cavalli; Livia Garzia; Craig Daniels; Xiaochong Wu; Maleeha A Qazi; Sheila K Singh; Jennifer A Chan; Marco A Marra; David Malkin; Peter Dirks; Lawrence Heisler; Trevor Pugh; Karen Ng; Faiyaz Notta; Eric M Thompson; Claudia L Kleinman; Alexandra L Joyner
Journal:  Nature       Date:  2019-05-01       Impact factor: 49.962

10.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

View more
  28 in total

Review 1.  Major Features of the 2021 WHO Classification of CNS Tumors.

Authors:  Heather L Smith; Nitin Wadhwani; Craig Horbinski
Journal:  Neurotherapeutics       Date:  2022-05-16       Impact factor: 7.620

2.  Structural variants shape driver combinations and outcomes in pediatric high-grade glioma.

Authors:  Frank P B Dubois; Ofer Shapira; Noah F Greenwald; Travis Zack; Jeremiah Wala; Jessica W Tsai; Alexander Crane; Audrey Baguette; Djihad Hadjadj; Ashot S Harutyunyan; Kiran H Kumar; Mirjam Blattner-Johnson; Jayne Vogelzang; Cecilia Sousa; Kyung Shin Kang; Claire Sinai; Dayle K Wang; Prasidda Khadka; Kathleen Lewis; Lan Nguyen; Hayley Malkin; Patricia Ho; Ryan O'Rourke; Shu Zhang; Rose Gold; Davy Deng; Jonathan Serrano; Matija Snuderl; Chris Jones; Karen D Wright; Susan N Chi; Jacques Grill; Claudia L Kleinman; Liliana C Goumnerova; Nada Jabado; David T W Jones; Mark W Kieran; Keith L Ligon; Rameen Beroukhim; Pratiti Bandopadhayay
Journal:  Nat Cancer       Date:  2022-07-04

Review 3.  Oncohistones: Exposing the nuances and vulnerabilities of epigenetic regulation.

Authors:  Michelle M Mitchener; Tom W Muir
Journal:  Mol Cell       Date:  2022-08-18       Impact factor: 19.328

4.  Aberrant paracrine signalling for bone remodelling underlies the mutant histone-driven giant cell tumour of bone.

Authors:  Lorena Ligammari; Hang-Mao Lee; Helen J Knowles; Lucia Cottone; Stephen Henderson; Sara Bianco; Christopher Davies; Sandra Strauss; Fernanda Amary; Ana Paula Leite; Roberto Tirabosco; Kristian Haendler; Joachim L Schultze; Javier Herrero; Paul O'Donnell; Agamemnon E Grigoriadis; Paolo Salomoni; Adrienne M Flanagan
Journal:  Cell Death Differ       Date:  2022-08-03       Impact factor: 12.067

Review 5.  Clinical implications of the 2021 edition of the WHO classification of central nervous system tumours.

Authors:  Roger J Packer; Patrick Y Wen; Craig Horbinski; Tamar Berger
Journal:  Nat Rev Neurol       Date:  2022-06-21       Impact factor: 44.711

Review 6.  Dissecting cell fate dynamics in pediatric glioblastoma through the lens of complex systems and cellular cybernetics.

Authors:  Abicumaran Uthamacumaran
Journal:  Biol Cybern       Date:  2022-06-09       Impact factor: 3.072

Review 7.  The Intricate Epigenetic and Transcriptional Alterations in Pediatric High-Grade Gliomas: Targeting the Crosstalk as the Oncogenic Achilles' Heel.

Authors:  Paul Huchedé; Pierre Leblond; Marie Castets
Journal:  Biomedicines       Date:  2022-06-03

Review 8.  The epigenetic dysfunction underlying malignant glioma pathogenesis.

Authors:  Sharvari Dharmaiah; Jason T Huse
Journal:  Lab Invest       Date:  2022-02-12       Impact factor: 5.502

Review 9.  The language of chromatin modification in human cancers.

Authors:  Shuai Zhao; C David Allis; Gang Greg Wang
Journal:  Nat Rev Cancer       Date:  2021-05-17       Impact factor: 60.716

10.  Characteristics of diffuse hemispheric gliomas, H3 G34-mutant in adults.

Authors:  Thiébaud Picart; Marc Barritault; Delphine Poncet; Lise-Prune Berner; Cristina Izquierdo; Emeline Tabouret; Dominique Figarella-Branger; Ahmed Idbaïh; Franck Bielle; Véronique Bourg; Fanny Burel Vandenbos; Elizabeth Cohen-Jonathan Moyal; Emmanelle Uro-Coste; Jacques Guyotat; Jérôme Honnorat; Mathieu Gabut; David Meyronet; François Ducray
Journal:  Neurooncol Adv       Date:  2021-04-19
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.