Literature DB >> 33256144

Sensing of Proteins by ICD Response of Iron(II) Clathrochelates Functionalized by Carboxyalkylsulfide Groups.

Mykhaylo Losytskyy1, Nina Chornenka2, Serhii Vakarov2, Samuel M Meier-Menches3, Christopher Gerner3, Slawomir Potocki4, Vladimir B Arion5, Elzbieta Gumienna-Kontecka4, Yan Voloshin6,7, Vladyslava Kovalska1.   

Abstract

Recognition of elements of protein tertiary structure is crucial for biotechnological and biomedical tasks; this makes the development of optical sensors for certain protein surface elements important. Herein, we demonstrated the ability of iron(II) clathrochelates (1-3) functionalized with mono-, di- and hexa-carboxyalkylsulfide to induce selective circular dichroism (CD) response upon binding to globular proteins. Thus, inherently CD-silent clathrochelates revealed selective inducing of CD spectra when binding to human serum albumin (HSA) (1, 2), beta-lactoglobuline (2) and bovine serum albumin (BSA) (3). Hence, functionalization of iron(II) clathrochelates with the carboxyalkylsulfide group appears to be a promising tool for the design of CD-probes sensitive to certain surface elements of proteins tertiary structure. Additionally, interaction of 1-3 with proteins was also studied by isothermal titration calorimetry, protein fluorescence quenching, electrospray ionization mass spectrometry (ESI-MS) and computer simulations. Formation of both 1:1 and 1:2 assemblies of HSA with 1-3 was evidenced by ESI-MS. A protein fluorescence quenching study suggests that 3 binds with both BSA and HSA via the sites close to Trp residues. Molecular docking calculations indicate that for both BSA and HSA, binding of 3 to Site I and to an "additional site" is more favorable energetically than binding to Site II.

Entities:  

Keywords:  CD reporters; ESI-TOF MS; ITC; albumins; fluorescence quenching; globular proteins; iron(II) clathrochelates

Year:  2020        PMID: 33256144      PMCID: PMC7759900          DOI: 10.3390/biom10121602

Source DB:  PubMed          Journal:  Biomolecules        ISSN: 2218-273X


  32 in total

1.  Induced CD of iron(ii) clathrochelates: sensing of the structural and conformational alterations of serum albumins.

Authors:  Vladyslava Kovalska; Marina Kuperman; Mykhaylo Losytskyy; Serhii Vakarov; Slawomir Potocki; Sergiy Yarmoluk; Yan Voloshin; Oleg Varzatskii; Elzbieta Gumienna-Kontecka
Journal:  Metallomics       Date:  2019-02-20       Impact factor: 4.526

Review 2.  Conformational constraints for amyloid fibrillation: the importance of being unfolded.

Authors:  Vladimir N Uversky; Anthony L Fink
Journal:  Biochim Biophys Acta       Date:  2004-05-06

3.  Arbitrary-Order Density Functional Response Theory from Automatic Differentiation.

Authors:  Ulf Ekström; Lucas Visscher; Radovan Bast; Andreas J Thorvaldsen; Kenneth Ruud
Journal:  J Chem Theory Comput       Date:  2010-07-13       Impact factor: 6.006

Review 4.  Protein misfolding and prion diseases.

Authors:  F E Cohen
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

Review 5.  Protein misfolding and aggregation: new examples in medicine and biology of the dark side of the protein world.

Authors:  Massimo Stefani
Journal:  Biochim Biophys Acta       Date:  2004-12-24

6.  Understanding the functional roles of amino acid residues in enzyme catalysis.

Authors:  Gemma L Holliday; John B O Mitchell; Janet M Thornton
Journal:  J Mol Biol       Date:  2009-05-15       Impact factor: 5.469

Review 7.  A review of methods used for identifying structural changes in a large protein complex.

Authors:  Owen W Nadeau; Gerald M Carlson
Journal:  Methods Mol Biol       Date:  2012

8.  A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu.

Authors:  Stefan Grimme; Jens Antony; Stephan Ehrlich; Helge Krieg
Journal:  J Chem Phys       Date:  2010-04-21       Impact factor: 3.488

Review 9.  Protein Misfolding, Amyloid Formation, and Human Disease: A Summary of Progress Over the Last Decade.

Authors:  Fabrizio Chiti; Christopher M Dobson
Journal:  Annu Rev Biochem       Date:  2017-05-12       Impact factor: 23.643

10.  Exploring the composition of protein-ligand binding sites on a large scale.

Authors:  Nickolay A Khazanov; Heather A Carlson
Journal:  PLoS Comput Biol       Date:  2013-11-21       Impact factor: 4.475

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  3 in total

1.  Protein Binding of Benzofuran Derivatives: A CD Spectroscopic and In Silico Comparative Study of the Effects of 4-Nitrophenyl Functionalized Benzofurans and Benzodifurans on BSA Protein Structure.

Authors:  Pasqualina Liana Scognamiglio; Caterina Vicidomini; Francesco Fontanella; Claudio De Stefano; Rosanna Palumbo; Giovanni N Roviello
Journal:  Biomolecules       Date:  2022-02-05

2.  CD, UV, and In Silico Insights on the Effect of 1,3-Bis(1'-uracilyl)-2-propanone on Serum Albumin Structure.

Authors:  Francesca Greco; Andrea Patrizia Falanga; Monica Terracciano; Carlotta D'Ambrosio; Gennaro Piccialli; Giorgia Oliviero; Giovanni Nicola Roviello; Nicola Borbone
Journal:  Biomolecules       Date:  2022-08-03

3.  Synthesis of Metalorganic Copolymers Containing Various Contorted Units and Iron(II) Clathrochelates with Lateral Butyl Chains: Conspicuous Adsorbents of Lithium Ions and Methylene Blue.

Authors:  Suchetha Shetty; Noorullah Baig; Moustafa Sherief Moustafa; Saleh Al-Mousawi; Bassam Alameddine
Journal:  Polymers (Basel)       Date:  2022-08-19       Impact factor: 4.967

  3 in total

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