Literature DB >> 33255265

Targeted Sequencing of Pancreatic Adenocarcinomas from Patients with Metachronous Pulmonary Metastases.

Viktor Hlavac1,2, Beatrice Mohelnikova-Duchonova3, Martin Lovecek4, Jiri Ehrmann5, Veronika Brynychova1,2, Katerina Kolarova3, Pavel Soucek1,2.   

Abstract

Mutation spectra of 250 cancer driver, druggable, and actionable genes were analyzed in surgically resected pancreatic ductal adenocarcinoma (PDAC) patients who developed metachronous pulmonary metastases. Targeted sequencing was performed in DNA from blood and archival samples of 15 primary tumors and three paired metastases. Results were complemented with the determination of G12V mutation in KRAS by droplet digital PCR. The median number of protein-changing mutations was 52 per patient. KRAS and TP53 were significantly enriched in fractions of mutations in hotspots. Individual gene mutation frequencies or mutational loads accounting separately for drivers, druggable, or clinically actionable genes, did not significantly associate with patients' survival. LRP1B was markedly mutated in primaries of patients who generalized (71%) compared to those developing solitary pulmonary metastases (0%). FLG2 was mutated exclusively in primary tumors compared to paired metastases. In conclusion, signatures of prognostically differing subgroups of PDAC patients were generated for further utilization in precision medicine.

Entities:  

Keywords:  adenocarcinoma; metastases; next-generation sequencing; pancreas; pulmonary; survival

Mesh:

Substances:

Year:  2020        PMID: 33255265      PMCID: PMC7760784          DOI: 10.3390/genes11121391

Source DB:  PubMed          Journal:  Genes (Basel)        ISSN: 2073-4425            Impact factor:   4.096


  54 in total

1.  Size matters: Dissecting key parameters for panel-based tumor mutational burden analysis.

Authors:  Ivo Buchhalter; Eugen Rempel; Volker Endris; Michael Allgäuer; Olaf Neumann; Anna-Lena Volckmar; Martina Kirchner; Jonas Leichsenring; Amelie Lier; Moritz von Winterfeld; Roland Penzel; Petros Christopoulos; Michael Thomas; Stefan Fröhling; Peter Schirmacher; Jan Budczies; Albrecht Stenzinger
Journal:  Int J Cancer       Date:  2018-12-04       Impact factor: 7.396

Review 2.  Toward better understanding of artifacts in variant calling from high-coverage samples.

Authors:  Heng Li
Journal:  Bioinformatics       Date:  2014-06-27       Impact factor: 6.937

3.  Comprehensive Characterization of Cancer Driver Genes and Mutations.

Authors:  Matthew H Bailey; Collin Tokheim; Eduard Porta-Pardo; Sohini Sengupta; Denis Bertrand; Amila Weerasinghe; Antonio Colaprico; Michael C Wendl; Jaegil Kim; Brendan Reardon; Patrick Kwok-Shing Ng; Kang Jin Jeong; Song Cao; Zixing Wang; Jianjiong Gao; Qingsong Gao; Fang Wang; Eric Minwei Liu; Loris Mularoni; Carlota Rubio-Perez; Niranjan Nagarajan; Isidro Cortés-Ciriano; Daniel Cui Zhou; Wen-Wei Liang; Julian M Hess; Venkata D Yellapantula; David Tamborero; Abel Gonzalez-Perez; Chayaporn Suphavilai; Jia Yu Ko; Ekta Khurana; Peter J Park; Eliezer M Van Allen; Han Liang; Michael S Lawrence; Adam Godzik; Nuria Lopez-Bigas; Josh Stuart; David Wheeler; Gad Getz; Ken Chen; Alexander J Lazar; Gordon B Mills; Rachel Karchin; Li Ding
Journal:  Cell       Date:  2018-04-05       Impact factor: 41.582

4.  LRP-DIT, a putative endocytic receptor gene, is frequently inactivated in non-small cell lung cancer cell lines.

Authors:  C X Liu; S Musco; N M Lisitsina; E Forgacs; J D Minna; N A Lisitsyn
Journal:  Cancer Res       Date:  2000-04-01       Impact factor: 12.701

5.  The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.

Authors:  Ethan Cerami; Jianjiong Gao; Ugur Dogrusoz; Benjamin E Gross; Selcuk Onur Sumer; Bülent Arman Aksoy; Anders Jacobsen; Caitlin J Byrne; Michael L Heuer; Erik Larsson; Yevgeniy Antipin; Boris Reva; Arthur P Goldberg; Chris Sander; Nikolaus Schultz
Journal:  Cancer Discov       Date:  2012-05       Impact factor: 39.397

6.  TP53 Mutations Predict Sensitivity to Adjuvant Gemcitabine in Patients with Pancreatic Ductal Adenocarcinoma: Next-Generation Sequencing Results from the CONKO-001 Trial.

Authors:  Marianne Sinn; Bruno V Sinn; Denise Treue; Ulrich Keilholz; Frederik Damm; Rosa Schmuck; Philipp Lohneis; Frederick Klauschen; Jana K Striefler; Marcus Bahra; Hendrik Bläker; Sven Bischoff; Uwe Pelzer; Helmut Oettle; Hanno Riess; Jan Budczies; Carsten Denkert
Journal:  Clin Cancer Res       Date:  2020-03-31       Impact factor: 12.531

7.  Response Rate Following Albumin-Bound Paclitaxel Plus Gemcitabine Plus Cisplatin Treatment Among Patients With Advanced Pancreatic Cancer: A Phase 1b/2 Pilot Clinical Trial.

Authors:  Gayle S Jameson; Erkut Borazanci; Hani M Babiker; Elizabeth Poplin; Anna A Niewiarowska; Michael S Gordon; Michael T Barrett; Adam Rosenthal; Amy Stoll-D'Astice; John Crowley; Lynn Shemanski; Ron L Korn; Karen Ansaldo; Leticia Lebron; Ramesh K Ramanathan; Daniel D Von Hoff
Journal:  JAMA Oncol       Date:  2019-10-03       Impact factor: 31.777

8.  Reducing amplification artifacts in high multiplex amplicon sequencing by using molecular barcodes.

Authors:  Quan Peng; Ravi Vijaya Satya; Marcus Lewis; Pranay Randad; Yexun Wang
Journal:  BMC Genomics       Date:  2015-08-07       Impact factor: 3.969

9.  Mutational heterogeneity in cancer and the search for new cancer-associated genes.

Authors:  Michael S Lawrence; Petar Stojanov; Paz Polak; Gregory V Kryukov; Kristian Cibulskis; Andrey Sivachenko; Scott L Carter; Chip Stewart; Craig H Mermel; Steven A Roberts; Adam Kiezun; Peter S Hammerman; Aaron McKenna; Yotam Drier; Lihua Zou; Alex H Ramos; Trevor J Pugh; Nicolas Stransky; Elena Helman; Jaegil Kim; Carrie Sougnez; Lauren Ambrogio; Elizabeth Nickerson; Erica Shefler; Maria L Cortés; Daniel Auclair; Gordon Saksena; Douglas Voet; Michael Noble; Daniel DiCara; Pei Lin; Lee Lichtenstein; David I Heiman; Timothy Fennell; Marcin Imielinski; Bryan Hernandez; Eran Hodis; Sylvan Baca; Austin M Dulak; Jens Lohr; Dan-Avi Landau; Catherine J Wu; Jorge Melendez-Zajgla; Alfredo Hidalgo-Miranda; Amnon Koren; Steven A McCarroll; Jaume Mora; Brian Crompton; Robert Onofrio; Melissa Parkin; Wendy Winckler; Kristin Ardlie; Stacey B Gabriel; Charles W M Roberts; Jaclyn A Biegel; Kimberly Stegmaier; Adam J Bass; Levi A Garraway; Matthew Meyerson; Todd R Golub; Dmitry A Gordenin; Shamil Sunyaev; Eric S Lander; Gad Getz
Journal:  Nature       Date:  2013-06-16       Impact factor: 49.962

10.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.