Literature DB >> 33235910

Annotation matters: validating the discovery of cancer drivers.

Marta Rodríguez-Martínez1, Jesper Q Svejstrup1.   

Abstract

Advanced sequencing techniques have helped unveil numerous new, potential cancer driver mutations. However, manual curation and analysis of gene and protein annotation are essential to verify such discoveries. Our recent study of STK19 (Serine Threonine Kinase 19), a previously identified melanoma driver, is a clear example of the importance of such detailed analysis, with both STK19 gene and protein annotations in frequently used databases having been proven incorrect.
© 2020 The Author(s). Published with license by Taylor & Francis Group, LLC.

Entities:  

Keywords:  STK19; annotation; cancer driver; kinase

Year:  2020        PMID: 33235910      PMCID: PMC7671066          DOI: 10.1080/23723556.2020.1806679

Source DB:  PubMed          Journal:  Mol Cell Oncol        ISSN: 2372-3556


  12 in total

1.  Molecular Genomic Profiling of Melanocytic Nevi.

Authors:  Andrew J Colebatch; Peter Ferguson; Felicity Newell; Stephen H Kazakoff; Tom Witkowski; Alexander Dobrovic; Peter A Johansson; Robyn P M Saw; Jonathan R Stretch; Grant A McArthur; Georgina V Long; John F Thompson; John V Pearson; Graham J Mann; Nicholas K Hayward; Nicola Waddell; Richard A Scolyer; James S Wilmott
Journal:  J Invest Dermatol       Date:  2019-02-14       Impact factor: 8.551

2.  A landscape of driver mutations in melanoma.

Authors:  Eran Hodis; Ian R Watson; Gregory V Kryukov; Stefan T Arold; Marcin Imielinski; Jean-Philippe Theurillat; Elizabeth Nickerson; Daniel Auclair; Liren Li; Chelsea Place; Daniel Dicara; Alex H Ramos; Michael S Lawrence; Kristian Cibulskis; Andrey Sivachenko; Douglas Voet; Gordon Saksena; Nicolas Stransky; Robert C Onofrio; Wendy Winckler; Kristin Ardlie; Nikhil Wagle; Jennifer Wargo; Kelly Chong; Donald L Morton; Katherine Stemke-Hale; Guo Chen; Michael Noble; Matthew Meyerson; John E Ladbury; Michael A Davies; Jeffrey E Gershenwald; Stephan N Wagner; Dave S B Hoon; Dirk Schadendorf; Eric S Lander; Stacey B Gabriel; Gad Getz; Levi A Garraway; Lynda Chin
Journal:  Cell       Date:  2012-07-20       Impact factor: 41.582

3.  Pharmacological Targeting of STK19 Inhibits Oncogenic NRAS-Driven Melanomagenesis.

Authors:  Chengqian Yin; Bo Zhu; Ting Zhang; Tongzheng Liu; Shuyang Chen; Yu Liu; Xin Li; Xiao Miao; Shanshan Li; Xia Mi; Jie Zhang; Li Li; Guo Wei; Zhi-Xiang Xu; Xiumei Gao; Canhua Huang; Zhi Wei; Colin R Goding; Peng Wang; Xianming Deng; Rutao Cui
Journal:  Cell       Date:  2019-01-31       Impact factor: 41.582

4.  Nucleotide excision repair is impaired by binding of transcription factors to DNA.

Authors:  Radhakrishnan Sabarinathan; Loris Mularoni; Jordi Deu-Pons; Abel Gonzalez-Perez; Núria López-Bigas
Journal:  Nature       Date:  2016-04-14       Impact factor: 49.962

5.  A Reply to ''Evidence that STK19 Is Not an NRAS-Dependent Melanoma Driver".

Authors:  Chengqian Yin; Bo Zhu; Xin Li; Colin R Goding; Rutao Cui
Journal:  Cell       Date:  2020-06-11       Impact factor: 41.582

6.  Genomic Classification of Cutaneous Melanoma.

Authors: 
Journal:  Cell       Date:  2015-06-18       Impact factor: 41.582

7.  The G11 gene located in the major histocompatibility complex encodes a novel nuclear serine/threonine protein kinase.

Authors:  N Gomez-Escobar; C F Chou; W W Lin; S L Hsieh; R D Campbell
Journal:  J Biol Chem       Date:  1998-11-20       Impact factor: 5.157

8.  Differential DNA repair underlies mutation hotspots at active promoters in cancer genomes.

Authors:  Dilmi Perera; Rebecca C Poulos; Anushi Shah; Dominik Beck; John E Pimanda; Jason W H Wong
Journal:  Nature       Date:  2016-04-14       Impact factor: 49.962

9.  CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise.

Authors:  Mihaela Pertea; Alaina Shumate; Geo Pertea; Ales Varabyou; Florian P Breitwieser; Yu-Chi Chang; Anil K Madugundu; Akhilesh Pandey; Steven L Salzberg
Journal:  Genome Biol       Date:  2018-11-28       Impact factor: 13.583

10.  Evidence That STK19 Is Not an NRAS-dependent Melanoma Driver.

Authors:  Marta Rodríguez-Martínez; Thierry Boissiére; Melvin Noe Gonzalez; Kevin Litchfield; Richard Mitter; Jane Walker; Svend Kjœr; Mohamed Ismail; Julian Downward; Charles Swanton; Jesper Q Svejstrup
Journal:  Cell       Date:  2020-06-11       Impact factor: 41.582

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