| Literature DB >> 33209684 |
Jianfeng Wang1, Meng Guo2, Xiaofeng Zhou1, Zhenshan Ding1, Xing Chen1, Yangtian Jiao1, Wenwei Ying1, Shuang Wu1, Xiaoyun Zhang1, Na Geng1.
Abstract
BACKGROUND: Bladder urothelial carcinoma (BLCA) is still one of the most malignant diseases and has a dismal outcome. Angiogenesis has confirmed its critical role in the development of malignant neoplasms. In this study, we uncovered the prognostic implications of the angiogenesis-related gene panel in urothelial tumors.Entities:
Keywords: Bladder urothelial carcinoma (BLCA); angiogenesis; gene expression profile; prognosis
Year: 2020 PMID: 33209684 PMCID: PMC7658114 DOI: 10.21037/tau-20-1291
Source DB: PubMed Journal: Transl Androl Urol ISSN: 2223-4683
Figure 1There were two clusters identified in the bladder urothelial carcinoma (BLCA) according to angiogenesis related gene profile. (A) the entire cohort divided into cluster_1 and the cluster_2 basing on genes expression; (B) the patients in cluster_1 showed a favorable prognosis in the terms of overall survival (OS), progression-free survival (PFS), disease-free survival (DFS) and disease-specific survival (DSS); (C) angiogenesis related genes were differently expressed between the two clusters.
The clinical features of each cluster
| Clinical features | Cluster_1 (n=150) | Cluster_2 (n=251) | P value |
|---|---|---|---|
| Age | 67.16667 | 68.72112 | 0.208864 |
| Sex | 0.241233 | ||
| Male | 116 | 180 | |
| Female | 34 | 71 | |
| AJCC stage | <0.001*** | ||
| Stage I | 2 | 0 | |
| Stage II | 72 | 56 | |
| Stage III | 39 | 99 | |
| Stage IV | 35 | 96 | |
| NA& | 2 | 0 | |
| Path M stage | <0.001*** | ||
| M0 | 93 | 98 | |
| M1 | 2 | 9 | |
| MX | 54 | 143 | |
| NA& | 1 | 1 | |
| Path N stage | 0.045* | ||
| N0 | 97 | 136 | |
| N1 | 8 | 37 | |
| N2 | 24 | 50 | |
| N3 | 2 | 5 | |
| N4 | 16 | 20 | |
| NA& | 3 | 3 | |
| Path T stage | <0.001*** | ||
| T0 | 1 | 0 | |
| T1 | 2 | 1 | |
| T2 | 63 | 54 | |
| T3 | 51 | 140 | |
| T4 | 16 | 41 | |
| TX | 1 | 0 | |
| NA& | 16 | 15 |
&, represented data deficient; *, P<0.05; ***, P<0.001.
The comparison of survival corresponds to each cluster
| Prognosis | Cluster_1 | Cluster_2 | P value | Hazard ratio | 95% CI of the ratio |
|---|---|---|---|---|---|
| OS | 86.83 | 27.06 | 0.001** | 0.5756 | 0.4241 to 0.7812 |
| DFS | 101.5 | Undefined | 0.978 | 0.9899 | 0.4853 to 2.019 |
| DSS | 104.6 | 51.16 | 0.001** | 0.5007 | 0.3458 to 0.7249 |
| PFS | 54.74 | 21.86 | 0.006** | 0.6304 | 0.4636 to 0.8573 |
**, P<0.01.
Differently expressed genes between the two clusters
| Genes | P values | Mean expression value in Cluster_1 | Mean expression value in Cluster_2 |
|---|---|---|---|
|
| 1.22E-52 | −0.71219 | 0.42392 |
|
| 1.47E-39 | −0.64355 | 0.383066 |
|
| 1.86E-36 | −0.62956 | 0.374739 |
|
| 1.09E-33 | 0.774641 | −0.4611 |
|
| 2.49E-33 | 0.767452 | −0.45682 |
|
| 2.64E-31 | 0.751268 | −0.44718 |
|
| 4.53E-30 | −0.62808 | 0.373854 |
|
| 1.61E-29 | −0.57319 | 0.341186 |
|
| 3.09E-26 | 0.658365 | −0.39188 |
|
| 1.02E-25 | −0.52427 | 0.312067 |
|
| 5.48E-25 | 0.69457 | −0.41343 |
|
| 2.35E-24 | −0.49913 | 0.297104 |
|
| 1.07E-23 | −0.53988 | 0.321357 |
|
| 1.21E-22 | 0.590577 | −0.35153 |
|
| 1.07E-21 | −0.53779 | 0.320115 |
|
| 2.72E-21 | −0.51258 | 0.305104 |
|
| 3.85E-20 | −0.54455 | 0.324137 |
|
| 2.52E-18 | −0.41217 | 0.245338 |
|
| 4.2E-18 | −0.43441 | 0.258575 |
|
| 4.82E-18 | 0.590072 | −0.35123 |
|
| 5.83E-18 | 0.524714 | −0.31233 |
|
| 6.06E-18 | −0.45278 | 0.269511 |
|
| 5.49E-17 | 0.489635 | −0.29145 |
|
| 7.54E-16 | 0.52137 | −0.31034 |
|
| 8.2E-16 | −0.43563 | 0.259303 |
|
| 3.55E-15 | 0.534683 | −0.31826 |
|
| 4.8E-15 | −0.41303 | 0.245851 |
|
| 1.14E-14 | 0.530007 | −0.31548 |
|
| 1.27E-14 | −0.39681 | 0.236198 |
|
| 3.75E-14 | −0.42852 | 0.255069 |
|
| 4.31E-14 | 0.420305 | −0.25018 |
|
| 1.21E-13 | −0.37564 | 0.223598 |
|
| 1.81E-13 | 0.401674 | −0.23909 |
|
| 2.02E-13 | −0.37136 | 0.22105 |
|
| 2.2E-13 | 0.491908 | −0.2928 |
|
| 3.48E-13 | −0.37989 | 0.226123 |
|
| 5.61E-13 | −0.34422 | 0.204892 |
|
| 2.62E-12 | 0.448416 | −0.26691 |
|
| 9.71E-12 | 0.366835 | −0.21835 |
|
| 1.14E-11 | 0.463117 | −0.27567 |
|
| 2.43E-11 | −0.35539 | 0.211541 |
|
| 3.08E-11 | −0.37258 | 0.221775 |
|
| 5.28E-10 | −0.32311 | 0.192326 |
|
| 6.59E-10 | 0.413028 | −0.24585 |
|
| 7.22E-10 | 0.392291 | −0.23351 |
|
| 7.84E-10 | 0.367841 | −0.21895 |
|
| 1.74E-09 | −0.33064 | 0.196807 |
|
| 1.99E-09 | 0.38305 | −0.22801 |
|
| 2.19E-09 | −0.32073 | 0.19091 |
|
| 9.77E-09 | 0.384205 | −0.22869 |
|
| 1.22E-08 | 0.391253 | −0.23289 |
|
| 1.58E-08 | −0.31405 | 0.186933 |
|
| 2.34E-08 | −0.32205 | 0.191699 |
|
| 2.72E-08 | 0.359058 | −0.21372 |
|
| 4.02E-08 | −0.26925 | 0.160269 |
|
| 5.42E-08 | −0.32646 | 0.194324 |
|
| 6.94E-08 | 0.286836 | −0.17074 |
|
| 1.95E-07 | −0.33507 | 0.199448 |
|
| 4.22E-07 | −0.24745 | 0.147291 |
|
| 9.83E-07 | −0.30112 | 0.179239 |
|
| 1.98E-06 | −0.28212 | 0.167926 |
|
| 2.21E-06 | 0.126084 | −0.07505 |
|
| 2.37E-06 | 0.31899 | −0.18987 |
|
| 2.76E-06 | 0.268654 | −0.15991 |
|
| 3.42E-06 | 0.319955 | −0.19045 |
|
| 3.52E-06 | −0.23848 | 0.141951 |
|
| 4.98E-06 | 0.287026 | −0.17085 |
|
| 9.95E-06 | 0.305397 | −0.18178 |
|
| 1.37E-05 | −0.2746 | 0.163454 |
|
| 3.49E-05 | 0.278346 | −0.16568 |
|
| 5.34E-05 | 0.27783 | −0.16538 |
|
| 6.94E-05 | −0.1998 | 0.11893 |
|
| 0.000115 | 0.204357 | −0.12164 |
|
| 0.000138 | −0.249 | 0.148212 |
|
| 0.000141 | −0.20855 | 0.124138 |
|
| 0.000177 | −0.22422 | 0.133465 |
|
| 0.000193 | 0.262918 | −0.1565 |
|
| 0.000198 | −0.24009 | 0.142914 |
|
| 0.000208 | 0.235631 | −0.14026 |
|
| 0.000265 | −0.20411 | 0.121496 |
|
| 0.000321 | −0.18018 | 0.107249 |
|
| 0.000362 | 0.216142 | −0.12866 |
|
| 0.000379 | 0.258381 | −0.1538 |
|
| 0.000383 | 0.212453 | −0.12646 |
|
| 0.000417 | −0.17544 | 0.104431 |
|
| 0.000423 | −0.23162 | 0.137869 |
|
| 0.000471 | −0.23597 | 0.140461 |
|
| 0.000591 | −0.21641 | 0.128817 |
|
| 0.000597 | 0.23889 | −0.1422 |
|
| 0.000702 | 0.204308 | −0.12161 |
|
| 0.000942 | 0.206711 | −0.12304 |
|
| 0.001225 | −0.20781 | 0.123699 |
|
| 0.001262 | 0.207137 | −0.1233 |
|
| 0.001483 | 0.119507 | −0.07114 |
|
| 0.002135 | 0.203182 | −0.12094 |
|
| 0.002441 | 0.201907 | −0.12018 |
|
| 0.002685 | 0.182248 | −0.10848 |
|
| 0.003462 | 0.195042 | −0.1161 |
|
| 0.007101 | 0.186722 | −0.11114 |
|
| 0.007547 | 0.18537 | −0.11034 |
|
| 0.01076 | −0.12543 | 0.07466 |
|
| 0.011818 | −0.16719 | 0.099516 |
|
| 0.018531 | −0.15539 | 0.092496 |
|
| 0.019834 | 0.146825 | −0.0874 |
|
| 0.02072 | −0.11266 | 0.067058 |
|
| 0.022248 | 0.159327 | −0.09484 |
|
| 0.02284 | −0.1134 | 0.067498 |
|
| 0.029006 | 0.141675 | −0.08433 |
|
| 0.029184 | −0.13632 | 0.081143 |
|
| 0.031866 | −0.10726 | 0.063843 |
|
| 0.033715 | 0.145457 | −0.08658 |
|
| 0.036101 | −0.13583 | 0.080854 |
|
| 0.038304 | −0.13581 | 0.080837 |
|
| 0.047238 | 0.130468 | −0.07766 |
|
| 0.049793 | −0.09987 | 0.059445 |
Figure 2Regression analysis revealed the genes expression correlated with stage progression. (A) the Pearson correlation value (r) of stage and genes; (B) the statistical significance (P value) of corresponding correlation values.
The angiogenesis-related gene correlated with tumor stages
| Genes | Pearson correlation | P value |
|---|---|---|
|
| 0.34 | 1.6E-12 |
|
| 0.33 | 7.67E-12 |
|
| 0.33 | 7.71E-12 |
|
| 0.29 | 9.26E-10 |
|
| 0.29 | 2.35E-09 |
|
| 0.27 | 2.14E-08 |
|
| 0.26 | 7.65E-08 |
|
| 0.26 | 1.11E-07 |
|
| 0.25 | 2.55E-07 |
|
| 0.23 | 1.06E-06 |
|
| 0.23 | 1.28E-06 |
|
| 0.23 | 2.5E-06 |
|
| 0.22 | 3.28E-06 |
|
| 0.21 | 7.83E-06 |
|
| 0.21 | 8.36E-06 |
|
| 0.21 | 1.02E-05 |
Figure 3The angiogenesis related gene signatures were capable to predicate the stage in bladder urothelial carcinoma (BLCA). (A) the expression of single gene FN1 was available to predicted the stage progression; (B) the genes set combining 16 genes was with superior efficacy in the prediction of the stage progression.
Figure 4The elevated expression of 8 genes were significantly associated with worse prognosis in BLCA (bladder urothelial carcinoma). (A,B,C,D,E,F,G,H) The different OS (overall survivals) regarding to high expression population and low expression population of ECM1, FN1, FGF1, FAP, JAM3, THBS1, MFGE8 and COL8A2.
The correlation of single gene expression with survival rate
| Genes | Median survival in low expression (Month) | Median survival in high expression (Month) | P value | Hazard Ratio | 95% CI of the ratio |
|---|---|---|---|---|---|
|
| 56.48 | 23.21 | <0.001*** | 1.72 | 1.275 to 2.320 |
|
| 64.8 | 26.14 | 0.004** | 1.564 | 1.162 to 2.105 |
|
| 59.31 | 23.64 | 0.005** | 1.519 | 1.129 to 2.044 |
|
| 56.48 | 27.45 | 0.020* | 1.449 | 1.073 to 1.959 |
|
| 51.16 | 27.06 | 0.026* | 1.396 | 1.037 to 1.879 |
|
| 86.83 | 27.45 | 0.028* | 1.402 | 1.043 to 1.885 |
|
| 61.45 | 27.45 | 0.028* | 1.394 | 1.037 to 1.873 |
|
| 64.8 | 28.24 | 0.035* | 1.388 | 1.031 to 1.868 |
|
| 61.45 | 28.41 | 0.074 | 1.314 | 0.9739 to 1.773 |
|
| 44.32 | 28.24 | 0.124 | 1.263 | 0.9387 to 1.696 |
|
| 41.75 | 28.41 | 0.132 | 1.255 | 0.9332 to 1.687 |
|
| 61.45 | 28.41 | 0.158 | 1.237 | 0.9204 to 1.662 |
|
| 41.75 | 33.01 | 0.216 | 1.205 | 0.8941 to 1.624 |
|
| 56.48 | 32.02 | 0.323 | 1.162 | 0.8639 to 1.564 |
|
| 41.75 | 33.01 | 0.432 | 1.127 | 0.837 to 1.518 |
|
| 31.2 | 34.98 | 0.872 | 1.025 | 0.7625 to 1.377 |
*, P<0.05; **, P<0.01; ***, P<0.001.