Literature DB >> 3320961

Transcriptional control of yeast ribosomal protein synthesis during carbon-source upshift.

M H Herruer1, W H Mager, L P Woudt, R T Nieuwint, G M Wassenaar, P Groeneveld, R J Planta.   

Abstract

Shifting a yeast culture from an ethanol-based medium to a glucose-based medium causes a coordinate increase of the cellular levels of ribosomal protein mRNAs by about a factor 4 within 30 min. Making use of hybrid genes encompassing different portions of the 5'-flanking region of the L25-gene, we could show that the increase in mRNAs is a transcriptional event, mediated through DNA sequences upstream of the ribosomal protein (rp) genes. Further analysis revealed that sequence elements are involved that many rp-genes have in common and that previously were identified as transcription activation sites (RPG-boxes or UASrpg). Using appropriate deletion mutants of the fusion genes we could demonstrate that a single RPG-box is sufficient for the transcriptional upshift. In addition, both copy genes encoding rp28 which differ considerably in their extent of transcriptional activity, show the upshift effect in a proportional manner. Definite proof for the role of the UASrpg in nutritional regulation was obtained by examining the effect of a synthetic RPG-box on transcription.

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Year:  1987        PMID: 3320961      PMCID: PMC339935          DOI: 10.1093/nar/15.24.10133

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  28 in total

1.  The structure of the gene coding for the phosphorylated ribosomal protein S10 in yeast.

Authors:  R J Leer; M M van Raamsdonk-Duin; C M Molenaar; L H Cohen; W H Mager; R J Planta
Journal:  Nucleic Acids Res       Date:  1982-10-11       Impact factor: 16.971

2.  Further evidence that the rna2 mutation of Saccharomyces cerevisiae affects mRNA processing.

Authors:  S Bromley; L Hereford; M Rosbash
Journal:  Mol Cell Biol       Date:  1982-10       Impact factor: 4.272

3.  Conserved sequences upstream of yeast ribosomal protein genes.

Authors:  R J Leer; M M Van Raamsdonk-Duin; W H Mager; R J Planta
Journal:  Curr Genet       Date:  1985       Impact factor: 3.886

4.  Hierarchy of elements regulating synthesis of ribosomal proteins in Saccharomyces cerevisiae.

Authors:  D R Kief; J R Warner
Journal:  Mol Cell Biol       Date:  1981-11       Impact factor: 4.272

5.  Ribosomal protein genes of yeast contain intervening sequences.

Authors:  G H Bollen; C M Molenaar; L H Cohen; M M van Raamsdonk-Duin; W H Mager; R J Planta
Journal:  Gene       Date:  1982-04       Impact factor: 3.688

6.  Analysis of single- and double-stranded nucleic acids on polyacrylamide and agarose gels by using glyoxal and acridine orange.

Authors:  G K McMaster; G G Carmichael
Journal:  Proc Natl Acad Sci U S A       Date:  1977-11       Impact factor: 11.205

7.  Yeast use translational control to compensate for extra copies of a ribosomal protein gene.

Authors:  N J Pearson; H M Fried; J R Warner
Journal:  Cell       Date:  1982-06       Impact factor: 41.582

8.  Yeast ribosomal protein S33 is encoded by an unsplit gene.

Authors:  R J Leer; M M van Raamsdonk-Duin; P J Schoppink; M T Cornelissen; L H Cohen; W H Mager; R J Planta
Journal:  Nucleic Acids Res       Date:  1983-11-25       Impact factor: 16.971

9.  The genes coding for histone H3 and H4 in Neurospora crassa are unique and contain intervening sequences.

Authors:  L P Woudt; A Pastink; A E Kempers-Veenstra; A E Jansen; W H Mager; R J Planta
Journal:  Nucleic Acids Res       Date:  1983-08-25       Impact factor: 16.971

10.  Distinctly regulated tandem upstream activation sites mediate catabolite repression of the CYC1 gene of S. cerevisiae.

Authors:  L Guarente; B Lalonde; P Gifford; E Alani
Journal:  Cell       Date:  1984-02       Impact factor: 41.582

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  43 in total

1.  A role for RNA metabolism in inducing the heat shock response.

Authors:  T Carlson; N Christian; J J Bonner
Journal:  Gene Expr       Date:  1999

2.  Transcriptional elements involved in the repression of ribosomal protein synthesis.

Authors:  B Li; C R Nierras; J R Warner
Journal:  Mol Cell Biol       Date:  1999-08       Impact factor: 4.272

3.  SSB, encoding a ribosome-associated chaperone, is coordinately regulated with ribosomal protein genes.

Authors:  N Lopez; J Halladay; W Walter; E A Craig
Journal:  J Bacteriol       Date:  1999-05       Impact factor: 3.490

4.  Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression.

Authors:  Rosa M Marion; Aviv Regev; Eran Segal; Yoseph Barash; Daphne Koller; Nir Friedman; Erin K O'Shea
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-07       Impact factor: 11.205

5.  The role of promoter elements of a ribosomal protein gene in Saccharomyces cerevisiae under various physiological conditions.

Authors:  S M Papciak; N J Pearson
Journal:  Mol Gen Genet       Date:  1992-07

6.  Functional analysis of a duplicated linked pair of ribosomal protein genes in Saccharomyces cerevisiae.

Authors:  D M Donovan; M P Remington; D A Stewart; J C Crouse; D J Miles; N J Pearson
Journal:  Mol Cell Biol       Date:  1990-11       Impact factor: 4.272

7.  Multiple factors bind the upstream activation sites of the yeast enolase genes ENO1 and ENO2: ABFI protein, like repressor activator protein RAP1, binds cis-acting sequences which modulate repression or activation of transcription.

Authors:  P K Brindle; J P Holland; C E Willett; M A Innis; M J Holland
Journal:  Mol Cell Biol       Date:  1990-09       Impact factor: 4.272

8.  An ARS/silencer binding factor also activates two ribosomal protein genes in yeast.

Authors:  J C Dorsman; M M Doorenbosch; C T Maurer; J H de Winde; W H Mager; R J Planta; L A Grivell
Journal:  Nucleic Acids Res       Date:  1989-07-11       Impact factor: 16.971

9.  Functional specificity among ribosomal proteins regulates gene expression.

Authors:  Suzanne Komili; Natalie G Farny; Frederick P Roth; Pamela A Silver
Journal:  Cell       Date:  2007-11-02       Impact factor: 41.582

10.  Characterisation of Saccharomyces cerevisiae genes encoding ribosomal protein YL6.

Authors:  J Moore; H T Jacobs; K Kaiser
Journal:  Mol Gen Genet       Date:  1995-04-20
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