| Literature DB >> 33203707 |
Ju-Sheng Zheng1,2, Jian'an Luan1, Eleni Sofianopoulou3, Fumiaki Imamura1, Isobel D Stewart1, Felix R Day1, Maik Pietzner1, Eleanor Wheeler1, Luca A Lotta1, Thomas E Gundersen4, Pilar Amiano5, Eva Ardanaz6,7,8, María-Dolores Chirlaque8,9, Guy Fagherazzi10,11, Paul W Franks12, Rudolf Kaaks13, Nasser Laouali11, Francesca Romana Mancini11, Peter M Nilsson12, N Charlotte Onland-Moret14, Anja Olsen15,16, Kim Overvad16,17, Salvatore Panico18, Domenico Palli19, Fulvio Ricceri20,21, Olov Rolandsson22, Annemieke M W Spijkerman23, María-José Sánchez24, Matthias B Schulze25,26,27, Núria Sala28, Sabina Sieri29, Anne Tjønneland16,30, Rosario Tumino31, Yvonne T van der Schouw14, Elisabete Weiderpass32, Elio Riboli33, John Danesh3,34,35,36,37,38, Adam S Butterworth3,34,36,37,38, Stephen J Sharp1, Claudia Langenberg1, Nita G Forouhi39, Nicholas J Wareham39.
Abstract
OBJECTIVE: Higher plasma vitamin C levels are associated with lower type 2 diabetes risk, but whether this association is causal is uncertain. To investigate this, we studied the association of genetically predicted plasma vitamin C with type 2 diabetes. RESEARCH DESIGN AND METHODS: We conducted genome-wide association studies of plasma vitamin C among 52,018 individuals of European ancestry to discover novel genetic variants. We performed Mendelian randomization analyses to estimate the association of genetically predicted differences in plasma vitamin C with type 2 diabetes in up to 80,983 case participants and 842,909 noncase participants. We compared this estimate with the observational association between plasma vitamin C and incident type 2 diabetes, including 8,133 case participants and 11,073 noncase participants.Entities:
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Year: 2020 PMID: 33203707 PMCID: PMC7783939 DOI: 10.2337/dc20-1328
Source DB: PubMed Journal: Diabetes Care ISSN: 0149-5992 Impact factor: 19.112
Figure 1Design of the study for MR analysis of plasma vitamin C with type 2 diabetes.
Lead SNPs identified in the genome-wide meta-analysis of plasma vitamin C across four cohort studies (Fenland, EPIC-Norfolk, EPIC-InterAct, and EPIC-CVD)
| Chromosome | Position (GRCh37) | Lead SNPs | Effect allele | Other allele | EAF | β | SE | Nearest gene | |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 2330190 | rs6693447 | T | G | 0.551 | 0.039 | 0.006 | 6.25 × 10−10 | RER1 |
| 2 | 220031255 | rs13028225 | T | C | 0.857 | 0.102 | 0.009 | 2.38 × 10−30 | SLC23A3 |
| 5 | 138715502 | rs33972313 | C | T | 0.968 | 0.360 | 0.018 | 4.61 × 10−90 | SLC23A1 |
| 5 | 176799992 | rs10051765 | C | T | 0.342 | 0.039 | 0.007 | 3.64 × 10−9 | RGS14 |
| 6 | 52725787 | rs7740812 | G | A | 0.594 | 0.038 | 0.006 | 1.88 × 10−9 | GSTA5 |
| 11 | 61570783 | rs174547 | C | T | 0.328 | 0.036 | 0.007 | 3.84 × 10−8 | FADS1 |
| 12 | 96249111 | rs117885456 | A | G | 0.087 | 0.078 | 0.012 | 1.70 × 10−11 | SNRPF |
| 12 | 102093459 | rs2559850 | A | G | 0.598 | 0.058 | 0.006 | 6.30 × 10−20 | CHPT1 |
| 14 | 105253581 | rs10136000 | A | G | 0.283 | 0.040 | 0.007 | 1.33 × 10−8 | AKT1 |
| 16 | 79740541 | rs56738967 | C | G | 0.321 | 0.041 | 0.007 | 7.62 × 10−10 | MAF |
| 17 | 59456589 | rs9895661 | T | C | 0.817 | 0.063 | 0.008 | 1.05 × 10−14 | BCAS3 |
EAF, effect allele frequency.
The β coefficients are in SD unit per allele; effect allele is the vitamin C-raising allele. The pooled sample size for the genome-wide meta-analyses is 52,018.
Figure 2Volcano plot for the association of the plasma vitamin C genetic score with blood metabolites. Associations of the 11 variant scores and the score excluding the FADS1 variant were estimated using fixed-effects meta-analyses of individual variant-metabolite associations aligned to the plasma vitamin C-raising alleles. The horizontal dashed line indicates a Bonferroni-corrected significance threshold (corrected for 175 tests), and diameters of points are proportional to abs(effect size)*50, where “abs” is the function to calculate the absolute value of the effect size.
Figure 3Genetically predicted and observational associations of plasma vitamin C with type 2 diabetes. A: MR and observational estimate of plasma vitamin C with type 2 diabetes. MR estimate of the association between a genetically predicted difference of 1 SD in plasma vitamin C and type 2 diabetes (odds ratio [OR]) was determined using different methods: inverse-variance weighted, MR Egger, and weighted median. Ten lead genetic variants (excluding FADS1 variant due to pleiotropic effects) identified in the present genome-wide meta-analysis were used for the MR analysis. Observational estimate of the association of plasma vitamin C with type 2 diabetes (hazard ratio [HR]) was estimated in EPIC-InterAct using Prentice-weighted Cox regression, adjusting for potential confounders. B: Scatter plot of genetic association with type 2 diabetes and genetic association with the plasma vitamin C levels.