Literature DB >> 33200960

Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex.

David M Geiser1, Abdullah M S Al-Hatmi2, Takayuki Aoki3, Tsutomu Arie4, Virgilio Balmas5, Irene Barnes6, Gary C Bergstrom7, Madan K Bhattacharyya8, Cheryl L Blomquist9, Robert L Bowden10, Balázs Brankovics11, Daren W Brown12, Lester W Burgess13, Kathryn Bushley14, Mark Busman12, José F Cano-Lira15, Joseph D Carrillo16, Hao-Xun Chang17, Chi-Yu Chen18, Wanquan Chen19, Martin Chilvers20, Sofia Chulze21, Jeffrey J Coleman22, Christina A Cuomo23, Z Wilhelm de Beer6, G Sybren de Hoog24, Johanna Del Castillo-Múnera25, Emerson M Del Ponte26, Javier Diéguez-Uribeondo27, Antonio Di Pietro28, Véronique Edel-Hermann29, Wade H Elmer30, Lynn Epstein25, Akif Eskalen25, Maria Carmela Esposto31, Kathryne L Everts32, Sylvia P Fernández-Pavía33, Gilvan Ferreira da Silva34, Nora A Foroud35, Gerda Fourie6, Rasmus J N Frandsen36, Stanley Freeman37, Michael Freitag38, Omer Frenkel37, Kevin K Fuller39, Tatiana Gagkaeva40, Donald M Gardiner41, Anthony E Glenn42, Scott E Gold42, Thomas R Gordon25, Nancy F Gregory43, Marieka Gryzenhout44, Josep Guarro45, Beth K Gugino1, Santiago Gutierrez46, Kim E Hammond-Kosack47, Linda J Harris48, Mónika Homa49, Cheng-Fang Hong18, László Hornok50, Jenn-Wen Huang18, Macit Ilkit51, Adriaana Jacobs52, Karin Jacobs53, Cong Jiang54, María Del Mar Jiménez-Gasco1, Seogchan Kang1, Matthew T Kasson55, Kemal Kazan41, John C Kennell56, Hye-Seon Kim12, H Corby Kistler57, Gretchen A Kuldau1, Tomasz Kulik58, Oliver Kurzai59, Imane Laraba12, Matthew H Laurence60, Theresa Lee61, Yin-Won Lee62, Yong-Hwan Lee62, John F Leslie63, Edward C Y Liew60, Lily W Lofton42, Antonio F Logrieco64, Manuel S López-Berges28, Alicia G Luque65, Erik Lysøe66, Li-Jun Ma67, Robert E Marra30, Frank N Martin68, Sara R May1, Susan P McCormick12, Chyanna McGee1, Jacques F Meis24, Quirico Migheli69, N M I Mohamed Nor70, Michel Monod71, Antonio Moretti64, Diane Mostert72, Giuseppina Mulè64, Françoise Munaut73, Gary P Munkvold74, Paul Nicholson75, Marcio Nucci76, Kerry O'Donnell12, Matias Pasquali77, Ludwig H Pfenning78, Anna Prigitano31, Robert H Proctor12, Stéphane Ranque79, Stephen A Rehner80, Martijn Rep81, Gerardo Rodríguez-Alvarado33, Lindy Joy Rose72, Mitchell G Roth82, Carmen Ruiz-Roldán28, Amgad A Saleh83, Baharuddin Salleh70, Hyunkyu Sang84, María Mercedes Scandiani65, Jonathan Scauflaire85, David G Schmale86, Dylan P G Short87, Adnan Šišić88, Jason A Smith89, Christopher W Smyth90, Hokyoung Son62, Ellie Spahr55, Jason E Stajich91, Emma Steenkamp6, Christian Steinberg92, Rajagopal Subramaniam48, Haruhisa Suga93, Brett A Summerell60, Antonella Susca64, Cassandra L Swett25, Christopher Toomajian63, Terry J Torres-Cruz1, Anna M Tortorano31, Martin Urban47, Lisa J Vaillancourt94, Gary E Vallad16, Theo A J van der Lee11, Dan Vanderpool95, Anne D van Diepeningen11, Martha M Vaughan12, Eduard Venter96, Marcele Vermeulen97, Paul E Verweij24, Altus Viljoen72, Cees Waalwijk11, Emma C Wallace1, Grit Walther59, Jie Wang98, Todd J Ward12, Brian L Wickes99, Nathan P Wiederhold100, Michael J Wingfield6, Ana K M Wood47, Jin-Rong Xu100, Xiao-Bing Yang75, Tapani Yli-Mattila101, Sung-Hwan Yun102, Latiffah Zakaria70, Hao Zhang19, Ning Zhang103, Sean X Zhang104, Xue Zhang54.   

Abstract

Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user's needs and established successful practice. In 2013, the Fusarium community voiced near unanimous support for a concept of Fusarium that represented a clade comprising all agriculturally and clinically important Fusarium species, including the F. solani species complex (FSSC). Subsequently, this concept was challenged in 2015 by one research group who proposed dividing the genus Fusarium into seven genera, including the FSSC described as members of the genus Neocosmospora, with subsequent justification in 2018 based on claims that the 2013 concept of Fusarium is polyphyletic. Here, we test this claim and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of Fusarium including the FSSC. We reassert the practical and scientific argument in support of a genus Fusarium that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students, and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species described as genus Neocosmospora were recombined in genus Fusarium, and nine others were renamed Fusarium. Here the global Fusarium community voices strong support for the inclusion of the FSSC in Fusarium, as it remains the best scientific, nomenclatural, and practical taxonomic option available.

Entities:  

Keywords:  evolution; fungal pathogens

Mesh:

Year:  2021        PMID: 33200960     DOI: 10.1094/PHYTO-08-20-0330-LE

Source DB:  PubMed          Journal:  Phytopathology        ISSN: 0031-949X            Impact factor:   4.010


  23 in total

1.  Antifungal Susceptibility of 182 Fusarium Species Isolates from 20 European Centers: Comparison between EUCAST and Gradient Concentration Strip Methods.

Authors:  Marion Blaize; Anne-Cecile Normand; Sebastien Imbert; Abdullah M S Al-Hatmi; Erja Chryssanthou; Sophie Cassaing; Christine Schuttler; Lilia Hasseine; Caroline Mahinc; Damien Costa; Christine Bonnal; Stéphane Ranque; Marc Sautour; Elisa Rubio; Laurence Delhaes; Arnaud Riat; Boualem Sendid; Lise Kristensen; Marcel Brandenberger; Dirk Stubbe; Sophie Brun; Renaud Piarroux; Arnaud Fekkar
Journal:  Antimicrob Agents Chemother       Date:  2021-09-20       Impact factor: 5.191

2.  Phytophthora: an ancient, historic, biologically and structurally cohesive and evolutionarily successful generic concept in need of preservation.

Authors:  Clive Brasier; Bruno Scanu; David Cooke; Thomas Jung
Journal:  IMA Fungus       Date:  2022-06-27       Impact factor: 8.044

3.  Characterization of Fusarium acuminatum: A Potential Enniatins Producer in Tunisian Wheat.

Authors:  Yasmine Chakroun; Souheib Oueslati; Laetitia Pinson-Gadais; Manef Abderrabba; Jean-Michel Savoie
Journal:  J Fungi (Basel)       Date:  2022-04-28

Review 4.  The Emergence of Fusarium oxysporum f. sp. apii Race 4 and Fusarium oxysporum f. sp. coriandrii Highlights Major Obstacles Facing Agricultural Production in Coastal California in a Warming Climate: A Case Study.

Authors:  Lynn Epstein; Sukhwinder Kaur; Peter M Henry
Journal:  Front Plant Sci       Date:  2022-06-13       Impact factor: 6.627

5.  A-to-I mRNA editing controls spore death induced by a fungal meiotic drive gene in homologous and heterologous expression systems.

Authors:  Jessica M Lohmar; Nicholas A Rhoades; Tejas N Patel; Robert H Proctor; Thomas M Hammond; Daren W Brown
Journal:  Genetics       Date:  2022-05-05       Impact factor: 4.402

6.  Antifungal Effect of Copper Nanoparticles against Fusarium kuroshium, an Obligate Symbiont of Euwallacea kuroshio Ambrosia Beetle.

Authors:  Enrique Ibarra-Laclette; Jazmín Blaz; Claudia-Anahí Pérez-Torres; Emanuel Villafán; Araceli Lamelas; Greta Rosas-Saito; Luis Arturo Ibarra-Juárez; Clemente de Jesús García-Ávila; Arturo Isaías Martínez-Enriquez; Nicolaza Pariona
Journal:  J Fungi (Basel)       Date:  2022-03-27

7.  Characterization of Two Fusarium solani Species Complex Isolates from the Ambrosia Beetle Xylosandrus morigerus.

Authors:  Nohemí Carreras-Villaseñor; José B Rodríguez-Haas; Luis A Martínez-Rodríguez; Alan J Pérez-Lira; Enrique Ibarra-Laclette; Emanuel Villafán; Ana P Castillo-Díaz; Luis A Ibarra-Juárez; Edgar D Carrillo-Hernández; Diana Sánchez-Rangel
Journal:  J Fungi (Basel)       Date:  2022-02-26

8.  Eye Infections Caused by Filamentous Fungi: Spectrum and Antifungal Susceptibility of the Prevailing Agents in Germany.

Authors:  Grit Walther; Anna Zimmermann; Johanna Theuersbacher; Kerstin Kaerger; Marie von Lilienfeld-Toal; Mathias Roth; Daniel Kampik; Gerd Geerling; Oliver Kurzai
Journal:  J Fungi (Basel)       Date:  2021-06-26

Review 9.  Long-Reads-Based Metagenomics in Clinical Diagnosis With a Special Focus on Fungal Infections.

Authors:  Minh Thuy Vi Hoang; Laszlo Irinyi; Yiheng Hu; Benjamin Schwessinger; Wieland Meyer
Journal:  Front Microbiol       Date:  2022-01-06       Impact factor: 5.640

10.  Malignant Keratitis Caused by a Highly-Resistant Strain of Fusarium Tonkinense from the Fusarium Solani Complex.

Authors:  Jens Schrecker; Berthold Seitz; Tim Berger; Loay Daas; Wolfgang Behrens-Baumann; Claudia Auw-Hädrich; Sabine Schütt; Sabine Kerl; Sascha Rentner-Andres; Herbert Hof
Journal:  J Fungi (Basel)       Date:  2021-12-18
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