Literature DB >> 33178434

Fusion of whole and part features for the classification of histopathological image of breast tissue.

Chiranjibi Sitaula1, Sunil Aryal1.   

Abstract

PURPOSE: Nowadays Computer-Aided Diagnosis (CAD) models, particularly those based on deep learning, have been widely used to analyze histopathological images in breast cancer diagnosis. However, due to the limited availability of such images, it is always tedious to train deep learning models that require a huge amount of training data. In this paper, we propose a new deep learning-based CAD framework that can work with less amount of training data.
METHODS: We use pre-trained models to extract image features that can then be used with any classifier. Our proposed features are extracted by the fusion of two different types of features (foreground and background) at two levels (whole-level and part-level). Foreground and background feature to capture information about different structures and their layout in microscopic images of breast tissues. Similarly, part-level and whole-level features capture are useful in detecting interesting regions scattered in high-resolution histopathological images at local and whole image levels. At each level, we use VGG16 models pre-trained on ImageNet and Places datasets to extract foreground and background features, respectively. All features are extracted from mid-level pooling layers of such models.
RESULTS: We show that proposed fused features with a Support Vector Classifier (SVM) produce better classification accuracy than recent methods on BACH dataset and our approach is orders of magnitude faster than the best performing recent method (EMS-Net).
CONCLUSION: We believe that our method would be another alternative in the diagnosis of breast cancer because of performance and prediction time. © Springer Nature Switzerland AG 2020.

Entities:  

Keywords:  Breast cancer; Computer-aided diagnosis; Deep learning; Histology; Histopathological images; Image classification

Year:  2020        PMID: 33178434      PMCID: PMC7642126          DOI: 10.1007/s13755-020-00131-7

Source DB:  PubMed          Journal:  Health Inf Sci Syst        ISSN: 2047-2501


  11 in total

1.  Robust segmentation of overlapping cells in histopathology specimens using parallel seed detection and repulsive level set.

Authors:  Xin Qi; Fuyong Xing; David J Foran; Lin Yang
Journal:  IEEE Trans Biomed Eng       Date:  2011-12-09       Impact factor: 4.538

2.  BACH: Grand challenge on breast cancer histology images.

Authors:  Guilherme Aresta; Teresa Araújo; Scotty Kwok; Sai Saketh Chennamsetty; Mohammed Safwan; Varghese Alex; Bahram Marami; Marcel Prastawa; Monica Chan; Michael Donovan; Gerardo Fernandez; Jack Zeineh; Matthias Kohl; Christoph Walz; Florian Ludwig; Stefan Braunewell; Maximilian Baust; Quoc Dang Vu; Minh Nguyen Nhat To; Eal Kim; Jin Tae Kwak; Sameh Galal; Veronica Sanchez-Freire; Nadia Brancati; Maria Frucci; Daniel Riccio; Yaqi Wang; Lingling Sun; Kaiqiang Ma; Jiannan Fang; Ismael Kone; Lahsen Boulmane; Aurélio Campilho; Catarina Eloy; António Polónia; Paulo Aguiar
Journal:  Med Image Anal       Date:  2019-05-31       Impact factor: 8.545

3.  MuDeRN: Multi-category classification of breast histopathological image using deep residual networks.

Authors:  Ziba Gandomkar; Patrick C Brennan; Claudia Mello-Thoms
Journal:  Artif Intell Med       Date:  2018-04-26       Impact factor: 5.326

Review 4.  Deep learning.

Authors:  Yann LeCun; Yoshua Bengio; Geoffrey Hinton
Journal:  Nature       Date:  2015-05-28       Impact factor: 49.962

5.  Patch-based system for Classification of Breast Histology images using deep learning.

Authors:  Kaushiki Roy; Debapriya Banik; Debotosh Bhattacharjee; Mita Nasipuri
Journal:  Comput Med Imaging Graph       Date:  2018-12-01       Impact factor: 4.790

6.  Efficient nucleus detector in histopathology images.

Authors:  J P Vink; M B Van Leeuwen; C H M Van Deurzen; G De Haan
Journal:  J Microsc       Date:  2012-12-17       Impact factor: 1.758

7.  Automated classification of brain tumor type in whole-slide digital pathology images using local representative tiles.

Authors:  Jocelyn Barker; Assaf Hoogi; Adrien Depeursinge; Daniel L Rubin
Journal:  Med Image Anal       Date:  2015-12-29       Impact factor: 8.545

8.  Breast cancer histopathological image classification using a hybrid deep neural network.

Authors:  Rui Yan; Fei Ren; Zihao Wang; Lihua Wang; Tong Zhang; Yudong Liu; Xiaosong Rao; Chunhou Zheng; Fa Zhang
Journal:  Methods       Date:  2019-06-15       Impact factor: 3.608

9.  U-Net: deep learning for cell counting, detection, and morphometry.

Authors:  Thorsten Falk; Dominic Mai; Robert Bensch; Özgün Çiçek; Ahmed Abdulkadir; Yassine Marrakchi; Anton Böhm; Jan Deubner; Zoe Jäckel; Katharina Seiwald; Alexander Dovzhenko; Olaf Tietz; Cristina Dal Bosco; Sean Walsh; Deniz Saltukoglu; Tuan Leng Tay; Marco Prinz; Klaus Palme; Matias Simons; Ilka Diester; Thomas Brox; Olaf Ronneberger
Journal:  Nat Methods       Date:  2018-12-17       Impact factor: 28.547

10.  Classification of breast cancer histology images using Convolutional Neural Networks.

Authors:  Teresa Araújo; Guilherme Aresta; Eduardo Castro; José Rouco; Paulo Aguiar; Catarina Eloy; António Polónia; Aurélio Campilho
Journal:  PLoS One       Date:  2017-06-01       Impact factor: 3.240

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  6 in total

1.  Multi-Classification of Breast Cancer Lesions in Histopathological Images Using DEEP_Pachi: Multiple Self-Attention Head.

Authors:  Chiagoziem C Ukwuoma; Md Altab Hossain; Jehoiada K Jackson; Grace U Nneji; Happy N Monday; Zhiguang Qin
Journal:  Diagnostics (Basel)       Date:  2022-05-05

2.  Vector representation based on a supervised codebook for Nepali documents classification.

Authors:  Chiranjibi Sitaula; Anish Basnet; Sunil Aryal
Journal:  PeerJ Comput Sci       Date:  2021-03-03

3.  Histo-CADx: duo cascaded fusion stages for breast cancer diagnosis from histopathological images.

Authors:  Omneya Attallah; Fatma Anwar; Nagia M Ghanem; Mohamed A Ismail
Journal:  PeerJ Comput Sci       Date:  2021-04-27

4.  Fusion of multi-scale bag of deep visual words features of chest X-ray images to detect COVID-19 infection.

Authors:  Chiranjibi Sitaula; Tej Bahadur Shahi; Sunil Aryal; Faezeh Marzbanrad
Journal:  Sci Rep       Date:  2021-12-13       Impact factor: 4.379

5.  A heterogeneous multi-modal medical data fusion framework supporting hybrid data exploration.

Authors:  Yong Zhang; Ming Sheng; Xingyue Liu; Ruoyu Wang; Weihang Lin; Peng Ren; Xia Wang; Enlai Zhao; Wenchao Song
Journal:  Health Inf Sci Syst       Date:  2022-08-26

6.  New bag of deep visual words based features to classify chest x-ray images for COVID-19 diagnosis.

Authors:  Chiranjibi Sitaula; Sunil Aryal
Journal:  Health Inf Sci Syst       Date:  2021-06-18
  6 in total

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