Literature DB >> 33175160

The European Nucleotide Archive in 2020.

Peter W Harrison1, Alisha Ahamed1, Raheela Aslam1, Blaise T F Alako1, Josephine Burgin1, Nicola Buso1, Mélanie Courtot1, Jun Fan1, Dipayan Gupta1, Muhammad Haseeb1, Sam Holt1, Talal Ibrahim1, Eugene Ivanov1, Suran Jayathilaka1, Vishnukumar Balavenkataraman Kadhirvelu1, Manish Kumar1, Rodrigo Lopez1, Simon Kay1, Rasko Leinonen1, Xin Liu1, Colman O'Cathail1, Amir Pakseresht1, Youngmi Park1, Stephane Pesant1, Nadim Rahman1, Jeena Rajan1, Alexey Sokolov1, Senthilnathan Vijayaraja1, Zahra Waheed1, Ahmad Zyoud1, Tony Burdett1, Guy Cochrane1.   

Abstract

The European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena), provided by the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI), has for almost forty years continued in its mission to freely archive and present the world's public sequencing data for the benefit of the entire scientific community and for the acceleration of the global research effort. Here we highlight the major developments to ENA services and content in 2020, focussing in particular on the recently released updated ENA browser, modernisation of our release process and our data coordination collaborations with specific research communities.
© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Year:  2020        PMID: 33175160     DOI: 10.1093/nar/gkaa1028

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  32 in total

1.  IMEx Databases: Displaying Molecular Interactions into a Single, Standards-Compliant Dataset.

Authors:  Pablo Porras; Sandra Orchard; Luana Licata
Journal:  Methods Mol Biol       Date:  2022

2.  A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes.

Authors:  Margo VanOeffelen; Marcus Nguyen; Derya Aytan-Aktug; Thomas Brettin; Emily M Dietrich; Ronald W Kenyon; Dustin Machi; Chunhong Mao; Robert Olson; Gordon D Pusch; Maulik Shukla; Rick Stevens; Veronika Vonstein; Andrew S Warren; Alice R Wattam; Hyunseung Yoo; James J Davis
Journal:  Brief Bioinform       Date:  2021-11-05       Impact factor: 13.994

3.  RadicalSAM.org: A Resource to Interpret Sequence-Function Space and Discover New Radical SAM Enzyme Chemistry.

Authors:  Nils Oberg; Timothy W Precord; Douglas A Mitchell; John A Gerlt
Journal:  ACS Bio Med Chem Au       Date:  2021-12-17

4.  GrainGenes: a data-rich repository for small grains genetics and genomics.

Authors:  Eric Yao; Victoria C Blake; Laurel Cooper; Charlene P Wight; Steve Michel; H Busra Cagirici; Gerard R Lazo; Clay L Birkett; David J Waring; Jean-Luc Jannink; Ian Holmes; Amanda J Waters; David P Eickholt; Taner Z Sen
Journal:  Database (Oxford)       Date:  2022-05-25       Impact factor: 4.462

5.  Database resources of the national center for biotechnology information.

Authors:  Eric W Sayers; Evan E Bolton; J Rodney Brister; Kathi Canese; Jessica Chan; Donald C Comeau; Ryan Connor; Kathryn Funk; Chris Kelly; Sunghwan Kim; Tom Madej; Aron Marchler-Bauer; Christopher Lanczycki; Stacy Lathrop; Zhiyong Lu; Francoise Thibaud-Nissen; Terence Murphy; Lon Phan; Yuri Skripchenko; Tony Tse; Jiyao Wang; Rebecca Williams; Barton W Trawick; Kim D Pruitt; Stephen T Sherry
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 19.160

6.  JaponicusDB: rapid deployment of a model organism database for an emerging model species.

Authors:  Kim M Rutherford; Midori A Harris; Snezhana Oliferenko; Valerie Wood
Journal:  Genetics       Date:  2022-04-04       Impact factor: 4.402

7.  Metagenomic Analysis of Common Intestinal Diseases Reveals Relationships among Microbial Signatures and Powers Multidisease Diagnostic Models.

Authors:  Puzi Jiang; Sicheng Wu; Qibin Luo; Xing-Ming Zhao; Wei-Hua Chen
Journal:  mSystems       Date:  2021-05-04       Impact factor: 6.496

8.  ELIXIR biovalidator for semantic validation of life science metadata.

Authors:  Isuru Liyanage; Tony Burdett; Bert Droesbeke; Karoly Erdos; Rolando Fernandez; Alasdair Gray; Muhammad Haseeb; Flavia Penim; Cyril Pommier; Philippe Rocca-Serra; Mélanie Courtot; Frederik Coppens
Journal:  Bioinformatics       Date:  2022-04-05       Impact factor: 6.931

9.  Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature.

Authors:  Matthias Lange; Blaise T F Alako; Guy Cochrane; Mehmood Ghaffar; Martin Mascher; Pia-Katharina Habekost; Upneet Hillebrand; Uwe Scholz; Florian Schorch; Jens Freitag; Amber Hartman Scholz
Journal:  Gigascience       Date:  2021-12-29       Impact factor: 6.524

10.  OncoSplicing: an updated database for clinically relevant alternative splicing in 33 human cancers.

Authors:  Yangjun Zhang; Xiangyang Yao; Hui Zhou; Xiaoliang Wu; Jianbo Tian; Jin Zeng; Libin Yan; Chen Duan; Haoran Liu; Heng Li; Ke Chen; Zhiquan Hu; Zhangqun Ye; Hua Xu
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

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