| Literature DB >> 33170857 |
Daniel Nüst1, Vanessa Sochat2, Ben Marwick3, Stephen J Eglen4, Tim Head5, Tony Hirst6, Benjamin D Evans7.
Abstract
Computational science has been greatly improved by the use of containers for packaging software and data dependencies. In a scholarly context, the main drivers for using these containers are transparency and support of reproducibility; in turn, a workflow's reproducibility can be greatly affected by the choices that are made with respect to building containers. In many cases, the build process for the container's image is created from instructions provided in a Dockerfile format. In support of this approach, we present a set of rules to help researchers write understandable Dockerfiles for typical data science workflows. By following the rules in this article, researchers can create containers suitable for sharing with fellow scientists, for including in scholarly communication such as education or scientific papers, and for effective and sustainable personal workflows.Entities:
Year: 2020 PMID: 33170857 PMCID: PMC7654784 DOI: 10.1371/journal.pcbi.1008316
Source DB: PubMed Journal: PLoS Comput Biol ISSN: 1553-734X Impact factor: 4.475