| Literature DB >> 33166344 |
Kai Wang1, Lin Ding1, Yu Yan1, Chengguqiu Dai1, Minghan Qu1, Dong Jiayi1, Xingjie Hao1.
Abstract
The Coronavirus Disease 2019 (COVID-19) has fast spread to over 200 countries and regions worldwide since its outbreak, while in March, Europe became the emerging epicentre. In this study, we aimed to model the epidemic trends and estimate the essential epidemic features of COVID-19 in Italy, Spain, Germany, and France at the initial stage. The numbers of daily confirmed cases and total confirmed cases were extracted from the Coronavirus disease (COVID-19) situation reports of WHO. We applied an extended Susceptible-Exposed-Infectious-Removed (SEIR) model to fit the epidemic trend and estimated corresponding epidemic features. The transmission rate estimates were 1.67 (95% credible interval (CrI), 1.64-1.71), 2.83 (2.72-2.85), 1.91 (1.84-1.98), and 1.89 (1.82-1.96) for Italy, Spain, Germany, and France, corresponding to the basic reproduction numbers (R0) 3.44 (3.35-3.54), 6.25 (5.97-6.55), 4.03 (3.84-4.23), and 4.00 (3.82-4.19), respectively. We found Spain had the lowest ascertainment rate of 0.22 (0.19-0.25), followed by France, Germany, and Italy of 0.45 (0.40-0.50), 0.46 (0.40-0.52), and 0.59 (0.55-0.64). The peaks of daily new confirmed cases would reach on April 16, April 5, April 21, and April 19 for Italy, Spain, Germany, and France if no action was taken by the authorities. Given the high transmissibility and high covertness of COVID-19, strict countermeasures, such as national lockdown and social distancing, were essential to be implemented to reduce the spread of the disease.Entities:
Mesh:
Year: 2020 PMID: 33166344 PMCID: PMC7652319 DOI: 10.1371/journal.pone.0241743
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
A. Initial state of the extent SEIR model for the main analysis in Italy and Spain.
B. Initial state of the extent SEIR model for the main analysis in Germany and France.
| Variable | Meaning | Italy | Spain | ||
|---|---|---|---|---|---|
| Value | Note | Value | Note | ||
| Number of susceptible individuals | 61,641,231 | 46,748,976 | |||
| Number of latent cases | 638 | Twice of the number of cases with confirmed from Feb. 22 to 26, 2020 | 204 | Twice of the number of cases with confirmed from Feb. 28 to Mar. 3, 2020 | |
| Number of ascertained infectious cases | 1 | Number of cases with confirmed before Feb. 22, 2020 minus | 10 | Number of cases with confirmed before Feb. 28, 2020 minus | |
| Number of unascertained infectious cases | 1 | Assume | 10 | Assume | |
| Number of hospitalized cases | 3 | Number of cases reported by Feb. 21, 2020 | 2 | Number of cases reported before Feb. 27, 2020 | |
| Number of removed individuals | 0 | Number of recovered patients by Feb. 21, 2020 | 0 | Number of recovered patients by Feb. 27, 2020 | |
| Number of susceptible individuals | 82,927,680 | 65,228,125 | |||
| Number of latent cases | 222 | Twice of the number of cases with Onset from Feb. 27 to Mar. 2,2020 | 346 | Twice of the number of cases with Onset from Feb. 28 to Mar. 3,2020 | |
| Number of ascertained infectious cases | 2 | Number of cases with onset before Feb. 27,2020 minus | 6 | Number of cases with onset before Feb. 28,2020 minus | |
| Number of unascertained infectious cases | 2 | Assume | 6 | Assume | |
| Number of hospitalized cases | 2 | Number of cases reported by Feb. 26,2020 | 12 | Number of cases reported before Feb. 27,2020 | |
| Number of removed individuals | 14 | Number of recovered patients by Feb. 26,2020 | 0 | Number of recovered patients by Feb. 27,2020 | |
Parameter values of the extent SEIR model for the main analysis.
| Parameter | Meaning | Italy | Spain | Germany | France |
|---|---|---|---|---|---|
| Transmission rate of ascertained cases | |||||
| Ascertainment rate | |||||
| Ratio of transmission rate between unascertained and ascertained cases | 1 | 1 | 1 | 1 | |
| Latent period | 5.2 | 5.2 | 5.2 | 5.2 | |
| Infectious period | 2.3 | 2.3 | 2.3 | 2.3 | |
| Duration from illness onset to hospitalization | 10 | 10 | 10 | 10 | |
| Hospitalized period | 30 | 30 | 30 | 30 | |
| Population size | 60,431,283 | 46,749,202 | 82,927,922 | 65,228,495 | |
| Daily inbound and outbound size | 250,000 | 360,000 | 380,000 | 260,000 |
Estimated b, r, and R for main and sensitivity analyses.
| Country | Parameter | Analysis | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Main | S1 | S2 | S3 | S4 | S5 | S6 | S7 | S8 | ||
| Italy | 1.67 (1.64–1.71) | 1.60 (1.57–1.62) | 1.80 (1.77–1.84) | 1.20 (1.18–1.23) | 2.15 (2.05–2.25) | 1.63 (1.60–1.67) | 1.67 (1.64–1.71) | 1.78 (1.76–1.81) | 1.63 (1.60–1.67) | |
| 0.59 (0.55–0.64) | 0.75 (0.70–0.80) | 0.54 (0.50–0.58) | 0.66 (0.62–0.71) | 0.59 (0.55–0.63) | 0.40 (0.37–0.43) | 0.59 (0.55–0.64) | 0.58 (0.55–0.63) | 0.60 (0.56–0.64) | ||
| 3.44 (3.35–3.54) | 3.17 (3.09–3.26) | 3.75 (3.65–3.86) | 4.44 (4.28–4.61) | 3.34 (3.25–3.43) | 3.50 (3.40–3.59) | 3.44 (3.35–3.54) | 3.42 (3.32–3.52) | 3.47 (3.38–3.56) | ||
| Spain | 2.83 (2.72–2.95) | 2.60 (2.50–2.71) | 3.12 (3.00–3.26) | 2.15 (2.05–2.25) | 4.74 (4.44–5.05) | 2.81 (2.69–2.93) | 2.83 (2.72–2.95) | 2.89 (2.78–3.00) | 2.81 (2.69–2.93) | |
| 0.22 (0.19–0.25) | 0.20 (0.17–0.23) | 0.19 (0.17–0.22) | 0.25 (0.21–0.28) | 0.21 (0.18–0.24) | 0.15 (0.13–0.17) | 0.22 (0.19–0.25) | 0.22 (0.19–0.25) | 0.22 (0.19–0.26) | ||
| 6.26 (5.98–6.56) | 5.77 (5.51–6.03) | 6.94 (6.62–7.26) | 9.14 (8.65–9.67) | 6.13 (5.83–6.44) | 6.30 (6.01–6.59) | 6.26 (5.98–6.55) | 6.24 (5.94–6.23) | 6.28 (5.98–6.57) | ||
| Germany | 1.91 (1.84–1.98) | 1.77 (1.71–1.84) | 2.10 (2.02–2.18) | 1.39 (1.33–1.45) | 2.68 (2.48–2.88) | 1.87 (1.80–1.95) | 1.91 (1.84–1.98) | 2.00 (1.94–2.06) | 1.88 (1.80–1.95) | |
| 0.46 (0.40–0.52) | 0.42 (0.36–0.47) | 0.52 (0.45–0.59) | 0.52 (0.45–0.59) | 0.46 (0.40–0.52) | 0.31 (0.27–0.36) | 0.46 (0.40–0.52) | 0.46 (0.40–0.52) | 0.46 (0.40–0.52) | ||
| 4.03 (3.84–4.23) | 3.77 (3.60–3.95) | 4.38 (4.17–4.61) | 5.42 (5.08–5.78) | 3.90 (3.72–4.09) | 4.08 (3.89–4.28) | 4.03 (3.84–4.23) | 4.01 (3.81–4.21) | 4.06 (3.87–4.26) | ||
| France | 1.89 (1.82–1.96) | 1.75 (1.69–1.81) | 2.06 (1.99–2.14) | 1.37 (1.32–1.43) | 2.68 (2.49–2.87) | 1.85 (1.78–1.93) | 1.89 (1.82–1.96) | 1.97 (1.91–2.03) | 1.85 (1.78–1.93) | |
| 0.45 (0.40–0.50) | 0.40 (0.36–0.45) | 0.45 (0.40–0.50) | 0.50 (0.44–0.55) | 0.44 (0.39–0.49) | 0.30 (0.27–0.33) | 0.45 (0.40–0.50) | 0.44 (0.39–0.49) | 0.45 (0.40–0.50) | ||
| 4.00 (3.82–4.19) | 3.74 (3.58–3.91) | 4.37 (4.17–4.58) | 5.40 (5.10–5.71) | 3.87 (3.70–4.06) | 4.04 (3.87–4.22) | 4.00 (3.82–4.18) | 3.98 (3.80–4.17) | 4.02 (3.84–4.21) | ||
Notes: the estimates were displayed as mean (95% Credible Intervals) based on 1,000,000 Markov Chain Monte Carlo iterations.