Literature DB >> 33155727

MDS-associated SF3B1 mutations enhance proinflammatory gene expression in patient blast cells.

Daniel A Pollyea1, Hyun Min Kim2, Brett M Stevens1, Frank Fang-Yao Lee3,4, Chelsea Harris3,4, Brenna R Hedin3,4, Jennifer R Knapp4, Brian P O'Connor3,4,5, Craig T Jordan1, Eric M Pietras1, Aik Choon Tan2,6, Scott Alper3,4,5.   

Abstract

Two factors known to contribute to the development of myelodysplastic syndrome (MDS) and other blood cancers are (i) somatically acquired mutations in components of the spliceosome and (ii) increased inflammation. Spliceosome genes, including SF3B1, are mutated at high frequency in MDS and other blood cancers; these mutations are thought to be neomorphic or gain-of-function mutations that drive disease pathogenesis. Likewise, increased inflammation is thought to contribute to MDS pathogenesis; inflammatory cytokines are strongly elevated in these patients, with higher levels correlating with worsened patient outcome. In the current study, we used RNAseq to analyze pre-mRNA splicing and gene expression changes present in blast cells isolated from MDS patients with or without SF3B1 mutations. We determined that SF3B1 mutations lead to enhanced proinflammatory gene expression in these cells. Thus, these studies suggest that SF3B1 mutations could contribute to MDS pathogenesis by enhancing the proinflammatory milieu in these patients. ©2020 Society for Leukocyte Biology.

Entities:  

Keywords:  RNAseq; inflammation; pre-mRNA splicing; spliceosome

Mesh:

Substances:

Year:  2020        PMID: 33155727      PMCID: PMC8612809          DOI: 10.1002/JLB.6AB0520-318RR

Source DB:  PubMed          Journal:  J Leukoc Biol        ISSN: 0741-5400            Impact factor:   6.011


  38 in total

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Journal:  Nat Rev Cancer       Date:  2007-02       Impact factor: 60.716

2.  Circulating S100A8 and S100A9 protein levels in plasma of patients with acquired aplastic anemia and myelodysplastic syndromes.

Authors:  Valentina Giudice; Zhijie Wu; Sachiko Kajigaya; Maria Del Pilar Fernandez Ibanez; Olga Rios; Foo Cheung; Sawa Ito; Neal S Young
Journal:  Cytokine       Date:  2018-06-27       Impact factor: 3.861

Review 3.  Innate immune signaling in the myelodysplastic syndromes.

Authors:  Daniel T Starczynowski; Aly Karsan
Journal:  Hematol Oncol Clin North Am       Date:  2010-04       Impact factor: 3.722

4.  Myelodysplastic syndrome-associated spliceosome gene mutations enhance innate immune signaling.

Authors:  Daniel A Pollyea; Chelsea Harris; Jennifer L Rabe; Brenna R Hedin; Lesly De Arras; Sigrid Katz; Emily Wheeler; Rafael Bejar; Matthew J Walter; Craig T Jordan; Eric M Pietras; Scott Alper
Journal:  Haematologica       Date:  2019-03-07       Impact factor: 9.941

Review 5.  Splicing Factor Mutations in Myelodysplasias: Insights from Spliceosome Structures.

Authors:  Jermaine L Jenkins; Clara L Kielkopf
Journal:  Trends Genet       Date:  2017-03-31       Impact factor: 11.639

6.  Identification of distinct prognostic subgroups in low- and intermediate-1-risk myelodysplastic syndromes by flow cytometry.

Authors:  Arjan A van de Loosdrecht; Theresia M Westers; August H Westra; Angelika M Dräger; Vincent H J van der Velden; Gert J Ossenkoppele
Journal:  Blood       Date:  2007-10-30       Impact factor: 22.113

7.  Cancer-Associated SF3B1 Hotspot Mutations Induce Cryptic 3' Splice Site Selection through Use of a Different Branch Point.

Authors:  Rachel B Darman; Michael Seiler; Anant A Agrawal; Kian H Lim; Shouyong Peng; Daniel Aird; Suzanna L Bailey; Erica B Bhavsar; Betty Chan; Simona Colla; Laura Corson; Jacob Feala; Peter Fekkes; Kana Ichikawa; Gregg F Keaney; Linda Lee; Pavan Kumar; Kaiko Kunii; Crystal MacKenzie; Mark Matijevic; Yoshiharu Mizui; Khin Myint; Eun Sun Park; Xiaoling Puyang; Anand Selvaraj; Michael P Thomas; Jennifer Tsai; John Y Wang; Markus Warmuth; Hui Yang; Ping Zhu; Guillermo Garcia-Manero; Richard R Furman; Lihua Yu; Peter G Smith; Silvia Buonamici
Journal:  Cell Rep       Date:  2015-10-22       Impact factor: 9.423

8.  U2AF1 mutations induce oncogenic IRAK4 isoforms and activate innate immune pathways in myeloid malignancies.

Authors:  Molly A Smith; Gaurav S Choudhary; Andrea Pellagatti; Kwangmin Choi; Lyndsey C Bolanos; Tushar D Bhagat; Shanisha Gordon-Mitchell; Dagny Von Ahrens; Kith Pradhan; Violetta Steeples; Sanghyun Kim; Ulrich Steidl; Matthew Walter; Iain D C Fraser; Aishwarya Kulkarni; Nathan Salomonis; Kakajan Komurov; Jacqueline Boultwood; Amit Verma; Daniel T Starczynowski
Journal:  Nat Cell Biol       Date:  2019-04-22       Impact factor: 28.824

9.  Aberrant splicing and defective mRNA production induced by somatic spliceosome mutations in myelodysplasia.

Authors:  Yusuke Shiozawa; Luca Malcovati; Anna Gallì; Aiko Sato-Otsubo; Keisuke Kataoka; Yusuke Sato; Yosaku Watatani; Hiromichi Suzuki; Tetsuichi Yoshizato; Kenichi Yoshida; Masashi Sanada; Hideki Makishima; Yuichi Shiraishi; Kenichi Chiba; Eva Hellström-Lindberg; Satoru Miyano; Seishi Ogawa; Mario Cazzola
Journal:  Nat Commun       Date:  2018-09-07       Impact factor: 14.919

10.  A pan-cancer analysis of transcriptome changes associated with somatic mutations in U2AF1 reveals commonly altered splicing events.

Authors:  Angela N Brooks; Peter S Choi; Luc de Waal; Tanaz Sharifnia; Marcin Imielinski; Gordon Saksena; Chandra Sekhar Pedamallu; Andrey Sivachenko; Mara Rosenberg; Juliann Chmielecki; Michael S Lawrence; David S DeLuca; Gad Getz; Matthew Meyerson
Journal:  PLoS One       Date:  2014-01-31       Impact factor: 3.240

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