| Literature DB >> 33153010 |
Ammira-Sarah Al-Shabeeb Akil1, Laila F Jerman1, Esraa Yassin1, Sujitha S Padmajeya1, Alya Al-Kurbi1, Khalid A Fakhro1,2,3.
Abstract
Type 1 diabetes (T1D) is an autoimmune condition where the body's immune cells destroy their insulin-producing pancreatic beta cells leading to dysregulated glycaemia. Individuals with T1D control their blood glucose through exogenous insulin replacement therapy, often using multiple daily injections or pumps. However, failure to accurately mimic intrinsic glucose regulation results in glucose fluctuations and long-term complications impacting key organs such as the heart, kidneys, and/or the eyes. It is well established that genetic and environmental factors contribute to the initiation and progression of T1D, but recent studies show that epigenetic modifications are also important. Here, we discuss key epigenetic modifications associated with T1D pathogenesis and discuss how recent research is finding ways to harness epigenetic mechanisms to prevent, reverse, or manage T1D.Entities:
Keywords: DNA methylation; chromatin; epigenetics; histone modifications; metaboloepigenetics; miRNA; therapy; type 1 diabetes
Mesh:
Substances:
Year: 2020 PMID: 33153010 PMCID: PMC7692667 DOI: 10.3390/cells9112403
Source DB: PubMed Journal: Cells ISSN: 2073-4409 Impact factor: 6.600
Figure 1Gene regulation by DNA methylation. DNA is methylated by the covalent addition of a methyl group to CpG dinucleotides by DNA methyltransferases. This process is generally associated with gene silencing.
Figure 2Histone modifications and chromatin structure. Histone methylation at lysine residues is associated with both gene expression and silencing, while acetylation is associated with repression.
Figure 3MicroRNA (miRNA) biogenesis and mechanism of action. miRNAs are transcribed in the nucleus as primary miRNA (pri-miRNA) and then cleaved into precursor miRNA (pre-miRNA) by the DORSHA–DGCR8 microprocessor complex. Pre-miRNA is then processed in the cytoplasm by the DICER enzyme, forming a bioactive miRNA duplex which can be bound by the RNA-induced silencing complex ready to target the complementary mRNA for silencing.
miRNAs that are differentially expressed between type 1 diabetes (T1D) patients and unaffected controls, targeting the drivers of epigenetic modification in T1D.
| miRNA | Target Gene/Pathway Related to T1D | Regulation T1D Patients/Controls | Tissue/Cell | Reference |
|---|---|---|---|---|
| miR-101-3p | c-MET proto-oncogene, receptor tyrosine kinase (c-Met-HGF), ephrin receptor, and signal transducer and activator of transcription 3 (STAT3) pathways linked to insulin secretion and β cells survival | Upregulated | Serum | [ |
| miR-125b-5p and miR-365a-3p | variation of hyperglycemia, measured (HbA1c) | Upregulated | Plasma | [ |
| miR-5190 and miR-770-5p | variation of hyperglycemia, measured (HbA1c) | Downregulated | Plasma | [ |
| miR-100-5p | Wnt signaling pathway | Downregulated | Serum | [ |
| miR-150-5p | transcription factor cMyb and IFN-r | Downregulated | PBMCs | [ |
| miR-154-3p | glycosaminoglycan biosynthesis | Downregulated | Serum | [ |
| miR-24-3p | MAPK and Wnt signaling pathways | Upregulated | Serum | [ |
| miR-25-3p | suppressor of cytokine Ssgnaling 5 (SOCS5), BTG anti-proliferation factor 2 (BTG2), PTEN/Akt pathway, and Notch signaling pathway | Upregulated | Serum | [ |
| miR-324-3p | GLI family zinc finger 3 (GLI3), Wnt family member 2B (WNT2B), MAPK pathway, Wnt/β-catenin signaling pathway | Upregulated | Serum | [ |
| miR-377-3p | Lysine degradation and ubiquitin-mediated proteolysis pathways | Upregulated | Serum | [ |
| miR-378e | Insulin-like growth factor receptor and lipid metabolism pathways, Adiponectin expression pathway | Downregulated | Plasma-derived exosome | [ |
| miR-424-5p | caudal type homeobox 2 (CDX2) transcriptional factor pathway | Downregulated | PBMCs | [ |
| miR-454-3p | nuclear factor of activated T cells 2 (NFATc2) and vitamin D-dependent calcium-binding protein calbindin 1 (CALB1), Wnt/β-catenin pathways | Upregulated | Serum | [ |
| miR-490-5p | Calcium-binding protein 5 (CABP5), phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha (PIK3CA), nuclear factor of activated T cells 5 (NFAT5) and TGF-beta-signaling pathways | Downregulated | Serum | [ |
| miR-574-3p | Mothers against decapentaplegic homolog 4(SMAD4) signaling pathway | Downregulated | Plasma-derived exosome | [ |
| miR-23a-3p | Death protein 5 (DP5), p53-upregulated modulator of apoptosis (PUMA), BCL2-associated X, apoptosis regulator (BAX), and BIM protein encoded by the | Downregulated | Pancreatic cells | [ |
| miR-23b-3p | DP5 and PUMA | Downregulated | Pancreatic cells | [ |
| miR-149-5p | DP5, PUMA, and BAX | Downregulated | Pancreatic cells | [ |
| miR-98 | TNF-related apoptosis-inducing ligand (TRAIL), TRAIL-receptor 2, FAS cell surface death receptor, and FASLG (Ligand) | Upregulated | T cells | [ |
| miR-146a | TNF receptor-associated factor 6 (TRAF6), NUMB endocytic adaptor protein, syntaxin 3 (STX3) and BAF chromatin-remodeling complex subunit(BCL11A) | Downregulated | PBMCs | [ |
| miR-590-5p | TRAIL, TRAIL-R2, FAS, and FASLG | Upregulated | T cells | [ |
| miR-23b | TRAIL, TRAIL-R2, FAS, and FASLG | Upregulated | T cells | [ |