| Literature DB >> 33147237 |
Sharifa Zaithun Begum1,2, Nurul Shairah Mohd Nizam2, Azira Muhamad3, Mohd Izham Saiman4, Karen Anne Crouse4, Mohd Basyaruddin Abdul Rahman1,4.
Abstract
Laccases, oxidative copper-enzymes found in fungi and bacteria were used as the basis in the design of nona- and tetrapeptides. Laccases are known to be excellent catalysts for the degradation of phenolic xenobiotic waste. However, since solvent extraction of laccases is environmentally-unfriendly and yields obtained are low, they are less preferred compared to synthetic catalysts. The histidine rich peptides were designed based on the active site of laccase extracted from Trametes versicolor through RCSB Protein Data Bank, LOMETS and PyMol software. The peptides were synthesized using Fmoc-solid phase peptide synthesis (SPPS) with 30-40% yield. These peptides were purified and characterized using LC-MS (purities >75%), FTIR and NMR spectroscopy. Synthesized copper(II)-peptides were crystallized and then analyzed spectroscopically. Their structures were elucidated using 1D and 2D NMR. Standards (o,m,p-cresol, 2,4-dichlorophenol) catalysed using laccase from Trametes versicolor (0.66 U/mg) were screened under different temperatures and stirring rate conditions. After optimizing the degradation of the standards with the best reaction conditions reported herein, medications with phenolic and aromatic structures such as ibuprofen, paracetamol (acetaminophen), salbutamol, erythromycin and insulin were screened using laccase (positive control), apo-peptides and copper-peptides. Their activities evaluated using GC-MS, were compared with those of peptide and copper-peptide catalysts. The tetrapeptide was found to have the higher degradation activity towards salbutamol (96.8%) compared with laccase at 42.8%. Ibuprofen (35.1%), salbutamol (52.9%) and erythromycin (49.7%) were reported to have the highest degradation activities using Cu-tetrapeptide as catalyst when compared with the other medications. Consequently, o-cresol (84%) was oxidized by Tp-Cu while the apo-peptides failed to oxidize the cresols. Copper(II)-peptides were observed to have higher catalytic activity compared to their parent peptides and the enzyme laccase for xenobiotic degradation.Entities:
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Year: 2020 PMID: 33147237 PMCID: PMC7641441 DOI: 10.1371/journal.pone.0238147
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Structure of Np (a) and Tp (b) Laccase from Trametes versicolor (pdb: 1KYA) (c) and mononuclear active site highlighting To sequence while trinuclear site highlighting Np sequence with a slight modification of Cys-Gly-Cis in the centre (d). * Red, green and blue: possible binding sites of Cu2+ with C = N, C-S and amide (-CONH-).
List of catalysts used for xenobiotic degradation of PhACs.
| Peptides/Peptides-Cu(II) | Cu-peptide molar ratio | Abbreviation |
|---|---|---|
| Np | - | Np |
| Np-CuSO4 | 1:4 | NpCuS 14 |
| Np-CuSO4 | 4:1 | NpCuS 41 |
| Np-Cu(CH3COO)2 | 1:2 | NpCuC 12 |
| Np-Cu(CH3COO)2 | 1:4 | NpCuC 14 |
| Np-Cu(CH3COO)2 | 4:1 | NpCuC 41 |
| Tp | - | Tp |
| Tp-CuSO4 | 1:2 | TpCuS 12 |
Physical characteristics and yields of solid peptides and their Cu complexes.
| Peptides/Cu-peptides | Physical appearance | % Yield | Melting point/°C | Solvent solubility | pH |
|---|---|---|---|---|---|
| Np | pale yellow powder | 1580 mg (33.6%) | 170.2 ± 0.2°C | Water (5 mL + 50 μL TFA) | 2.61 |
| NpCuC 12 | dark green crystals | 40.2 mg (29.5%) | 230 ± 0.0°C | Hot ethanol (5 mL) | 3.99 |
| Tp | white powder | 1480 mg (40.0%) | 152.5 ± 0.1°C | Water (5 mL + 50 μL TFA) | 3.17 |
| TpCuC 12 | turquoise crystals | 21.5 mg (25.4%) | 258.0 ± 0.0°C (decompose) | Hot ethanol (5 mL) | 5.12 |
*m: melted, d: decomposed.
*Np: Nonapeptide HHHCGCHHH, Tp: Tetrapeptide HMGC.
1H NMR chemical shifts of peptides.
| Amino acid | Theoretical | Np (HHHCGCHHH) | Tp (HMGC) |
|---|---|---|---|
| δ/ppm | δ/ppm (T, Int) | δ/ppm (T, Int) | |
| His 1 | 8.26, 7.82, 7.17, 4.62, 3.16, 3.10 | 7.39(t,3H), 7.13 (m,6H), 4.38 (d,1H), 3.19–3.00 (m,12H) | 7.66 (t,1H), 7.17 (d,3H), 4.16 (t,2H), 3.21 (d,2H) |
| His 2 | 8.40 (s,1H), 7.30 (t,2H), 7.10 (m,6H), 4.37 (d,1H), 3.19–3.00 (m,12H) | - | |
| His 3 | 8.48 (d,1H), 7.78 (t,2H), 7.19 (m,6H), 4.51(m,1H), 3.19–3.00 (m,12H) | ||
| His 7 | 8.50 (d,1H), 7.71 (m,1H), 7.18 (m,6H), 4.50 (m,1H), 3.19–3.00 (m,12H) | ||
| His 8 | 8.41(s,1H), 7.51 (m,1H), 7.16 (m,6H), 4.42 (m,1H), 3.19–3.00 (m,12H) | ||
| His 9 | 8.41(s,2H), 7.52 (m,1H), 7.17 (m,6H), 4.43 (m,1H), 3.19–3.00 (m,12H) | ||
| Met | 8.26, 4.41, 2.36, 2.33, | - | 8.26 (m,2H), 4.41 (t,2H), 2.49 (d,4H), 1.92 (s,2H) |
| Gly | 8.33, 3.96, 3.89 | 8.17 (d,1H), 3.92 (dd,1H), 3.85 (dd,1H) | 8.26 (m,2H), 3.93 (d,2H) |
| Cys 4 | 8.38, 4.68, 3.16, 3,10, 2.01 | 8.57 (d,1H), 4.09 (s,3H), 2.81 (dd,5H), 2.74 (dd,4H), 1.95 (s,1H) | 8.63 (t,1H), 4.44 (m,1H), 2.84 (dd,5H), 2.00 (d,1H) |
| Cys 6 | 8.63 (d,1H), 4.16 (s,3H), 2.82 (dd,5H), 2.75 (dd,4H), 2.08 (s,1H) | - |
*: attained ** http://www.bmrb.wisc.edu/ref_info/statful.htm (Theoretical NMR values) [23].
His1-3 and His 7–9: Specific assignments to differentiate between the histidine could not be carried out in Nonapeptide. The chemical shifts corresponding to each histidine are based on the spin system of different chemical environment between neighbouring amino acids.
Fig 21D 1H NMR spectra of peptides and their Cu-peptides at pH 6 and 25°C.
(a) Apo-Np, NpCuC 41 & 14 and NpCuS 41 & 14. *Blue: Apo-Np, Red: NpCuS 14, Green: NpCuS 41, Purple: NpCuC 41, Black: NpCuC 14. Spectra are on a scale of 16. *NMR of NpCuC 12 was not recorded as it precipitated with the deuterated solvents.(b) Apo-Tp (green) and TpCuS 12 (purple).
HPLC-UV and LC-MS analytical results.
| Peptides | RT/min | Purity/% | Molecular mass/g mol-1 | m/z | Charge |
|---|---|---|---|---|---|
| Np | 9.378 | 93.1 | 1325.42 (1325.45) | 1326.50 | -1 |
| Tp | 4.913 | 9.2 | 445.16 | 444.15 | -1 |
| 5.660 | 78.3 | 445.16(445.57) | 444.15 |
m/z mass to charge ratio, R is the retention time, (Theoretical mass).
Fig 3NMR spectra suggest square planar geometry for (a) Np-Cu(CH3COO)2 in 1:4 ratio, (b) Np-Cu(CH3COO)2 4:1 ratio; preferred due to steric hindrance of side chains and (c) tetrahedral geometry for Tp-CuSO4 1:2 ratio with bridging sulphate ligand. *Op1-4 the remaining 8 amino acids of the nonapeptide (Octapeptide).
Xenobiotics degradation of PhACs using apo-peptides and their Cu-peptides.
| Catalysts | Tp | Tp-CuS (1:2) | Np-CuC (1:2) | |||
|---|---|---|---|---|---|---|
| %C | Products | %C | Products | %C | Products | |
| 0 | No activity | 2-hydroxy-2-methylbutanoic acid (17.8%), 2,2-dimethoxybutane (59.6%) Methyl-2-hydroxyisocaproate (6.48%) | 0 | No activity | ||
| 0 | No activity | 2,2-dimethoxybutane (0.10%), 3,4-dimethylphenol (0.16%) | 0 | No activity | ||
| 0 | No activity | 0.10 | 2,2-dimethoxybutane | m-phenoxybenzoic acid (0.56%) 1,4-dimethyl-7-(1-methylethyl)-azulen-2-ol (1.65%) ketones/diones (0.85%) | ||
| 2,4-dichlorophenol | 0 | No activity | 2,2-dimethoxybutane | 0 | No activity | |
| Salbutamol | Benzoic acid | 52.9 | 2,2-dimethoxybutane | 3-(4-methoxyphenoxy)-1,2-propanediol | ||
| Erythromycin | 1,3,6-Trioxocane (33.2%), 1,4-Dioxane (24.0%) | 49.7 | Tetramethyl-D-(+)-xylose (8.07%), Ethyl decanoate (3.22%), 1,3:2,5-dimethylene-4-methyl-d-rhamnitol (38.4%) | 34.7 | N,N`-dimethyl-urea (19.6%) 1,4-Dioxane (15.1%) | |
| Ibuprofen | 29.9 | N-propxycarbonyl-butyl-I-valine ester | α-methyl-4-(2-methylpropyl)-benzeneacetaldehyde | 3.57 | Ibuprofen methyl ester (2.05%) α-methyl-4-(2-methylpropyl)-benzeneacetaldehyde (1.52%) | |
*Apo-Np was an ineffective catalyst as no activity or low activity (<1%) was detected by GC-MS.
*Since NpCuC 14&41 and NpCuS 14&41 were in aqueous solution, they were not used for this organic degradation as water affects the reaction. Np, Tp, NpCuC 12 and TpCuS 12 were solid catalysts.
*No oxidation activity was observed for medications diphenylhydrazine (Uphadyl Forte), insulin (Insuman Rapid& Basal), diclofenac, Celebrex, orphenadol, heparinol and cetrizine.
%C: % conversion/degradation.
Xenobiotics degradation of PhACs using laccase, H2O2, laccase & H2O2.
| No | Substrate | Oxidized products (% conversion, m/z in amu) | ||
|---|---|---|---|---|
| Laccase | Laccase + H2O2 | H2O2 | ||
| 1 | o-cresol | Benzoic acid (2.4%, 123.12) | 2-chloroethyl-3-methylphenyl carbonic acid ester (3.6%, 214.091) | 2-methyl-p-benzoquinone (1.8%, 122.037) |
| 2 | Salbutamol | m-cresol (7.5%, 108.06) p-cresol (92.5%, 108.06) | Benzoic acid (85.1%, 205.074) | o-cresol (4.5%) m-cresol (95.5%) |
| 3 | Uphadyl Forte | Benzoic acid (9.7%, 122.04) | Methylparaben (54.4%, 152.047) | Benzoic acid (7.1%) 3-methyl-1,2-benzenediol (8.4%, 124.052) Methylparaben (8.8%) |
| 4 | Erythromycin | 3-(1-Methoxy-1-methylethoxy)-2-methylpropionic acid (44.6%, 172.146) 14,15-diethyl-bicyclo[10.4.0]hexadecane (30.7%, 249.079) | methyl 2,3,4-tri-O-methyl-β-D-xylopyranoside (14.0%, 204.063) 3-(1-Methoxy-1-methylethoxy)-2-methylpropionic acid (20.0%) | 3-(1-Methoxy-1-methylethoxy)-2-methylpropionic acid (4.5%) |
| 5 | Insuman Rapid | Oleanitrile (65.1%, 476.129) | 4-chloro-m-cresol (39.8%, 142.019) | 4-chloro-m-cresol (83.5%) |
| 6 | Insuman Basal | 1,1,3,3,5,5,7,7,9,9,11,11-dodecamethyl-hexosiloxane (100%, 250.121) | 4-chloro-m-cresol (48.6%) | 4-chloro-m-cresol (25.3%) |
| 7 | Cataflam/ Diclofenac | 2-ethylbutyl octyl-2,6-pyridinedicarboxylic acid ester (9.0%, 276.101) | 1,3-dihydro-2H-Indol-2-one (97.5%, 277.006) | 1,3-dihydro-2H-Indol-2-one (82.0%) |
| 8 | Celebrex | 13-(Z)-Docosenamide (1.3%, 337.334) | 5-Methylbenzimidazo[2,1-a]phthalazine (56.0%, 302.153) | 5-Methylbenzimidazo[2,1-a]phthalazine (66.1%) |
| 9 | Ibuprofen | 6-amino-2-(4-methylphenyl)- naphthalimide (100%, 302.106) | 1-(p-fluorophenyl)-anthraquinone (100%, 302.065) | 1-(p-fluorophenyl)anthraquinone (100%) |
| 10 | Orphenadol | 2-(2,4-dinitrophenylhydrazono) propionic acid (16.3%, 268.044) | Methyl hexadecanoic acid ester (0.4%, 270.256) | Methyl hexadecanoic acid ester (0.4%) |
| 11 | Heparinol | Benzyl Alcohol (92.2%, 108.058) 6-Octadecenoic acid (1.4%, 252.282) | Benzyl Alcohol (92.2%) Dimethyl acetal benzaldehyde (2.4%, 152.084) | Benzyl Alcohol (92.8%) Dimethyl acetal benzaldehyde (3.1%) |
| 12 | Cetrizine | Methylparaben (45.6%, 152.047) Chlorcyclizine (1.7%, 300.139) | Methylparaben (31.7%) chlorcyclizine (1.2%) | Methylparaben (23.6%) chlorcyclizine (1.1%) |
* m/z values are not repeated for the same products.
Scheme 1Proposed mechanism for the oxidation of Salbutamol catalyzed by Tp.
Scheme 2Proposed mechanism for the oxidation of Salbutamol catalyzed by Cu2+-Tp-Cu2+.