Literature DB >> 33146573

Novel Type V-A CRISPR Effectors Are Active Nucleases with Expanded Targeting Capabilities.

Daniela S Aliaga Goltsman1, Lisa M Alexander1, Audra E Devoto1, Justine B Albers1, Jason Liu1, Cristina N Butterfield1, Christopher T Brown1, Brian C Thomas1.   

Abstract

Cas12a enzymes are quickly being adopted for use in a variety of genome-editing applications. These programmable nucleases are part of adaptive microbial immune systems, the natural diversity of which has been largely unexplored. Here, we identified novel families of Type V-A CRISPR nucleases through a large-scale analysis of metagenomes collected from a variety of complex environments, and developed representatives of these systems into gene-editing platforms. The nucleases display extensive protein variation and can be programmed by a single-guide RNA with specific motifs. The majority of these enzymes are part of systems recovered from uncultivated organisms, some of which also encode a divergent Type V effector. Biochemical analysis uncovered unexpected protospacer adjacent motif diversity, indicating that these systems will facilitate a variety of genome-engineering applications. The simplicity of guide sequences and activity in human cell lines suggest utility in gene and cell therapies.

Entities:  

Year:  2020        PMID: 33146573      PMCID: PMC7757703          DOI: 10.1089/crispr.2020.0043

Source DB:  PubMed          Journal:  CRISPR J        ISSN: 2573-1599


  31 in total

1.  Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system.

Authors:  Bernd Zetsche; Jonathan S Gootenberg; Omar O Abudayyeh; Ian M Slaymaker; Kira S Makarova; Patrick Essletzbichler; Sara E Volz; Julia Joung; John van der Oost; Aviv Regev; Eugene V Koonin; Feng Zhang
Journal:  Cell       Date:  2015-09-25       Impact factor: 41.582

2.  Clustal W and Clustal X version 2.0.

Authors:  M A Larkin; G Blackshields; N P Brown; R Chenna; P A McGettigan; H McWilliam; F Valentin; I M Wallace; A Wilm; R Lopez; J D Thompson; T J Gibson; D G Higgins
Journal:  Bioinformatics       Date:  2007-09-10       Impact factor: 6.937

3.  RNA-guided DNA insertion with CRISPR-associated transposases.

Authors:  Jonathan Strecker; Alim Ladha; Zachary Gardner; Jonathan L Schmid-Burgk; Kira S Makarova; Eugene V Koonin; Feng Zhang
Journal:  Science       Date:  2019-06-06       Impact factor: 47.728

4.  Functionally diverse type V CRISPR-Cas systems.

Authors:  Winston X Yan; Pratyusha Hunnewell; Lauren E Alfonse; Jason M Carte; Elise Keston-Smith; Shanmugapriya Sothiselvam; Anthony J Garrity; Shaorong Chong; Kira S Makarova; Eugene V Koonin; David R Cheng; David A Scott
Journal:  Science       Date:  2018-12-06       Impact factor: 47.728

5.  Genome-wide analysis reveals specificities of Cpf1 endonucleases in human cells.

Authors:  Daesik Kim; Jungeun Kim; Junho K Hur; Kyung Wook Been; Sun-Heui Yoon; Jin-Soo Kim
Journal:  Nat Biotechnol       Date:  2016-06-06       Impact factor: 54.908

6.  PAM recognition by miniature CRISPR-Cas12f nucleases triggers programmable double-stranded DNA target cleavage.

Authors:  Tautvydas Karvelis; Greta Bigelyte; Joshua K Young; Zhenglin Hou; Rimante Zedaveinyte; Karolina Budre; Sushmitha Paulraj; Vesna Djukanovic; Stephen Gasior; Arunas Silanskas; Česlovas Venclovas; Virginijus Siksnys
Journal:  Nucleic Acids Res       Date:  2020-05-21       Impact factor: 16.971

Review 7.  CRISPR-Cas guides the future of genetic engineering.

Authors:  Gavin J Knott; Jennifer A Doudna
Journal:  Science       Date:  2018-08-31       Impact factor: 47.728

8.  CRISPR recognition tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats.

Authors:  Charles Bland; Teresa L Ramsey; Fareedah Sabree; Micheal Lowe; Kyndall Brown; Nikos C Kyrpides; Philip Hugenholtz
Journal:  BMC Bioinformatics       Date:  2007-06-18       Impact factor: 3.169

9.  Rapid characterization of CRISPR-Cas9 protospacer adjacent motif sequence elements.

Authors:  Tautvydas Karvelis; Giedrius Gasiunas; Joshua Young; Greta Bigelyte; Arunas Silanskas; Mark Cigan; Virginijus Siksnys
Journal:  Genome Biol       Date:  2015-11-19       Impact factor: 13.583

10.  Fast and sensitive taxonomic classification for metagenomics with Kaiju.

Authors:  Peter Menzel; Kim Lee Ng; Anders Krogh
Journal:  Nat Commun       Date:  2016-04-13       Impact factor: 14.919

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  1 in total

1.  Characterization of Cme and Yme thermostable Cas12a orthologs.

Authors:  Ryan T Fuchs; Jennifer L Curcuru; Megumu Mabuchi; Audrey Noireterre; Peter R Weigele; Zhiyi Sun; G Brett Robb
Journal:  Commun Biol       Date:  2022-04-06
  1 in total

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