Literature DB >> 33145588

Graded Image Generation Using Stratified CycleGAN.

Jianfei Liu1, Joanne Li1, Tao Liu1, Johnny Tam1.   

Abstract

In medical imaging, CycleGAN has been used for various image generation tasks, including image synthesis, image denoising, and data augmentation. However, when pushing the technical limits of medical imaging, there can be a substantial variation in image quality. Here, we demonstrate that images generated by CycleGAN can be improved through explicit grading of image quality, which we call stratified CycleGAN. In this image generation task, CycleGAN is used to upgrade the image quality and content of near-infrared fluorescent (NIRF) retinal images. After manual assignment of grading scores to a small subset of the data, semi-supervised learning is applied to propagate grades across the remainder of the data and set up the training data. These scores are embedded into the CycleGAN by adding the grading score as a conditional input to the generator and by integrating an image quality classifier into the discriminator. We validate the efficacy of the proposed stratified CycleGAN by considering pairs of NIRF images at the same retinal regions (imaged with and without correction of optical aberrations achieved using adaptive optics), with the goal being to restore image quality in aberrated images such that cellular-level detail can be obtained. Overall, stratified CycleGAN generated higher quality synthetic images than traditional CycleGAN. Evaluation of cell detection accuracy confirmed that synthetic images were faithful to ground truth images of the same cells. Across this challenging dataset, F1-score improved from 76.9 ± 5.7% when using traditional CycleGAN to 85.0±3.4% when using stratified CycleGAN. These findings demonstrate the potential of stratified Cycle-GAN to improve the synthesis of medical images that exhibit a graded variation in image quality.

Entities:  

Keywords:  Adaptive optics; Cell detection; CycleGAN; Data parsing; Image quality; Ophthalmology; Semi-supervised learning

Year:  2020        PMID: 33145588      PMCID: PMC7605896          DOI: 10.1007/978-3-030-59713-9_73

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  10 in total

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2.  Active Appearance Model Induced Generative Adversarial Network for Controlled Data Augmentation.

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4.  Generative adversarial network in medical imaging: A review.

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5.  Generative Adversarial Networks for Noise Reduction in Low-Dose CT.

Authors:  Jelmer M Wolterink; Tim Leiner; Max A Viergever; Ivana Isgum
Journal:  IEEE Trans Med Imaging       Date:  2017-05-26       Impact factor: 10.048

6.  CBCT-based synthetic CT generation using deep-attention cycleGAN for pancreatic adaptive radiotherapy.

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7.  Tumor-aware, Adversarial Domain Adaptation from CT to MRI for Lung Cancer Segmentation.

Authors:  Harini Veeraraghavan; Jue Jiang; Yu-Chi Hu; Neelam Tyagi; Pengpeng Zhang; Andreas Rimner; Gig S Mageras; Joseph O Deasy
Journal:  Med Image Comput Comput Assist Interv       Date:  2018-09

8.  Medical Image Synthesis with Deep Convolutional Adversarial Networks.

Authors:  Dong Nie; Roger Trullo; Jun Lian; Li Wang; Caroline Petitjean; Su Ruan; Qian Wang; Dinggang Shen
Journal:  IEEE Trans Biomed Eng       Date:  2018-03-09       Impact factor: 4.538

9.  Data augmentation using generative adversarial networks (CycleGAN) to improve generalizability in CT segmentation tasks.

Authors:  Veit Sandfort; Ke Yan; Perry J Pickhardt; Ronald M Summers
Journal:  Sci Rep       Date:  2019-11-15       Impact factor: 4.379

10.  In Vivo Imaging of the Human Retinal Pigment Epithelial Mosaic Using Adaptive Optics Enhanced Indocyanine Green Ophthalmoscopy.

Authors:  Johnny Tam; Jianfei Liu; Alfredo Dubra; Robert Fariss
Journal:  Invest Ophthalmol Vis Sci       Date:  2016-08-01       Impact factor: 4.799

  10 in total

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