Literature DB >> 3313282

Competition between sigma factors for core RNA polymerase.

S Malik1, K Zalenskaya, A Goldfarb.   

Abstract

The switch of RNA polymerase specificity from early to late promoters of bacteriophage T4 is achieved by substitution of host sigma factor, sigma 70, with the T4 induced factor, sigma gp55. However, overproduction of sigma gp55 from an expression vector is not detrimental to Escherichia coli growth. Direct competition binding assays demonstrate that sigma 70 readily displaces sigma gp55 from RNA polymerase and thereby reverses the promoter specificity of the enzyme. The displacement also occurs with the core enzyme modified by bacteriophage T4 infection. We postulate that an antagonist of sigma 70 should be formed in T4-infected cells to aid sigma gp55 in the early/late switch.

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Year:  1987        PMID: 3313282      PMCID: PMC306375          DOI: 10.1093/nar/15.20.8521

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  17 in total

1.  Sigma factors from E. coli, B. subtilis, phage SP01, and phage T4 are homologous proteins.

Authors:  M Gribskov; R R Burgess
Journal:  Nucleic Acids Res       Date:  1986-08-26       Impact factor: 16.971

2.  Overexpression and purification of the sigma subunit of Escherichia coli RNA polymerase.

Authors:  M Gribskov; R R Burgess
Journal:  Gene       Date:  1983-12       Impact factor: 3.688

3.  The effect of a bacteriophage T4-induced polypeptide on host RNA polymerase interaction with promoters.

Authors:  S Malik; A Goldfarb
Journal:  J Biol Chem       Date:  1984-11-10       Impact factor: 5.157

4.  Cascades of Sigma factors.

Authors:  R Losick; J Pero
Journal:  Cell       Date:  1981-09       Impact factor: 41.582

5.  Initiation of transcription by bacteriophage T4-modified RNA polymerase independently of host sigma factor.

Authors:  S Malik; M Dimitrov; A Goldfarb
Journal:  J Mol Biol       Date:  1985-09-05       Impact factor: 5.469

6.  The sigma-like product of sporulation gene spoIIAC of Bacillus subtilis is toxic to Escherichia coli.

Authors:  M D Yudkin
Journal:  Mol Gen Genet       Date:  1986-01

7.  A gene regulating the heat shock response in Escherichia coli also affects proteolysis.

Authors:  T A Baker; A D Grossman; C A Gross
Journal:  Proc Natl Acad Sci U S A       Date:  1984-11       Impact factor: 11.205

8.  Defining a bacteriophage T4 late promoter: bacteriophage T4 gene 55 protein suffices for directing late promoter recognition.

Authors:  G A Kassavetis; E P Geiduschek
Journal:  Proc Natl Acad Sci U S A       Date:  1984-08       Impact factor: 11.205

9.  ADP ribosylation of Escherichia coli RNA polymerase is nonessential for bacteriophage T4 development.

Authors:  C G Goff; J Setzer
Journal:  J Virol       Date:  1980-01       Impact factor: 5.103

10.  Bacillus subtilis sigma 28 and Escherichia coli sigma 32 (htpR) are minor sigma factors that display an overlapping promoter specificity.

Authors:  J F Briat; M Z Gilman; M J Chamberlin
Journal:  J Biol Chem       Date:  1985-02-25       Impact factor: 5.157

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  13 in total

1.  Regulation of sigma factor competition by the alarmone ppGpp.

Authors:  Miki Jishage; Kristian Kvint; Victoria Shingler; Thomas Nyström
Journal:  Genes Dev       Date:  2002-05-15       Impact factor: 11.361

2.  A mutant sigma 32 with a small deletion in conserved region 3 of sigma has reduced affinity for core RNA polymerase.

Authors:  Y N Zhou; W A Walter; C A Gross
Journal:  J Bacteriol       Date:  1992-08       Impact factor: 3.490

3.  Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymerase.

Authors:  H Maeda; N Fujita; A Ishihama
Journal:  Nucleic Acids Res       Date:  2000-09-15       Impact factor: 16.971

4.  Genome-wide promoter assembly in E. coli measured at single-base resolution.

Authors:  Jordan John; Javaid Jabbar; Nitika Badjatia; Matthew J Rossi; William K M Lai; B Franklin Pugh
Journal:  Genome Res       Date:  2022-04-28       Impact factor: 9.438

5.  Bacteriophage T4 MotA and AsiA proteins suffice to direct Escherichia coli RNA polymerase to initiate transcription at T4 middle promoters.

Authors:  M Ouhammouch; K Adelman; S R Harvey; G Orsini; E N Brody
Journal:  Proc Natl Acad Sci U S A       Date:  1995-02-28       Impact factor: 11.205

6.  Rapid isolation and identification of bacteriophage T4-encoded modifications of Escherichia coli RNA polymerase: a generic method to study bacteriophage/host interactions.

Authors:  Lars F Westblade; Leonid Minakhin; Konstantin Kuznedelov; Alan J Tackett; Emmanuel J Chang; Rachel A Mooney; Irina Vvedenskaya; Qing Jun Wang; David Fenyö; Michael P Rout; Robert Landick; Brian T Chait; Konstantin Severinov; Seth A Darst
Journal:  J Proteome Res       Date:  2008-02-14       Impact factor: 4.466

7.  The asiA gene product of bacteriophage T4 is required for middle mode RNA synthesis.

Authors:  M Ouhammouch; G Orsini; E N Brody
Journal:  J Bacteriol       Date:  1994-07       Impact factor: 3.490

8.  Production and secretion stress caused by overexpression of heterologous alpha-amylase leads to inhibition of sporulation and a prolonged motile phase in Bacillus subtilis.

Authors:  Andrzej T Lulko; Jan-Willem Veening; Girbe Buist; Wiep Klaas Smits; Evert Jan Blom; Aaron C Beekman; Sierd Bron; Oscar P Kuipers
Journal:  Appl Environ Microbiol       Date:  2007-06-22       Impact factor: 4.792

9.  RpoS expression and the general stress response in Azotobacter vinelandii during carbon and nitrogen diauxic shifts.

Authors:  James R Sandercock; William J Page
Journal:  J Bacteriol       Date:  2007-11-30       Impact factor: 3.490

10.  How molecular competition influences fluxes in gene expression networks.

Authors:  Dirk De Vos; Frank J Bruggeman; Hans V Westerhoff; Barbara M Bakker
Journal:  PLoS One       Date:  2011-12-05       Impact factor: 3.240

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