Literature DB >> 33131680

Deep active learning for Interictal Ictal Injury Continuum EEG patterns.

Wendong Ge1, Jin Jing1, Sungtae An2, Aline Herlopian3, Marcus Ng4, Aaron F Struck5, Brian Appavu6, Emily L Johnson7, Gamaleldin Osman8, Hiba A Haider9, Ioannis Karakis9, Jennifer A Kim3, Jonathan J Halford10, Monica B Dhakar9, Rani A Sarkis11, Christa B Swisher12, Sarah Schmitt10, Jong Woo Lee11, Mohammad Tabaeizadeh13, Andres Rodriguez9, Nicolas Gaspard14, Emily Gilmore15, Susan T Herman16, Peter W Kaplan17, Jay Pathmanathan18, Shenda Hong2, Eric S Rosenthal1, Sahar Zafar1, Jimeng Sun19, M Brandon Westover20.   

Abstract

OBJECTIVES: Seizures and seizure-like electroencephalography (EEG) patterns, collectively referred to as "ictal interictal injury continuum" (IIIC) patterns, are commonly encountered in critically ill patients. Automated detection is important for patient care and to enable research. However, training accurate detectors requires a large labeled dataset. Active Learning (AL) may help select informative examples to label, but the optimal AL approach remains unclear.
METHODS: We assembled >200,000 h of EEG from 1,454 hospitalized patients. From these, we collected 9,808 labeled and 120,000 unlabeled 10-second EEG segments. Labels included 6 IIIC patterns. In each AL iteration, a Dense-Net Convolutional Neural Network (CNN) learned vector representations for EEG segments using available labels, which were used to create a 2D embedding map. Nearest-neighbor label spreading within the embedding map was used to create additional pseudo-labeled data. A second Dense-Net was trained using real- and pseudo-labels. We evaluated several strategies for selecting candidate points for experts to label next. Finally, we compared two methods for class balancing within queries: standard balanced-based querying (SBBQ), and high confidence spread-based balanced querying (HCSBBQ).
RESULTS: Our results show: 1) Label spreading increased convergence speed for AL. 2) All query criteria produced similar results to random sampling. 3) HCSBBQ query balancing performed best. Using label spreading and HCSBBQ query balancing, we were able to train models approaching expert-level performance across all pattern categories after obtaining ∼7000 expert labels.
CONCLUSION: Our results provide guidance regarding the use of AL to efficiently label large EEG datasets in critically ill patients.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Active learning; Convolutional neural network; Electroencephalography(EEG); Embedding map; Ictal Interictal Injury Continuum; Machine learning; Seizure

Mesh:

Year:  2020        PMID: 33131680      PMCID: PMC8135050          DOI: 10.1016/j.jneumeth.2020.108966

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  15 in total

1.  Classification of seizure and non-seizure EEG signals using empirical mode decomposition.

Authors:  Varun Bajaj; Ram Bilas Pachori
Journal:  IEEE Trans Inf Technol Biomed       Date:  2011-12-22

Review 2.  Unified EEG terminology and criteria for nonconvulsive status epilepticus.

Authors:  Sándor Beniczky; Lawrence J Hirsch; Peter W Kaplan; Ronit Pressler; Gerhard Bauer; Harald Aurlien; Jan C Brøgger; Eugen Trinka
Journal:  Epilepsia       Date:  2013-09       Impact factor: 5.864

3.  Cerebral location of international 10-20 system electrode placement.

Authors:  R W Homan; J Herman; P Purdy
Journal:  Electroencephalogr Clin Neurophysiol       Date:  1987-04

Review 4.  American Clinical Neurophysiology Society's Standardized Critical Care EEG Terminology: 2012 version.

Authors:  L J Hirsch; S M LaRoche; N Gaspard; E Gerard; A Svoronos; S T Herman; R Mani; H Arif; N Jette; Y Minazad; J F Kerrigan; P Vespa; S Hantus; J Claassen; G B Young; E So; P W Kaplan; M R Nuwer; N B Fountain; F W Drislane
Journal:  J Clin Neurophysiol       Date:  2013-02       Impact factor: 2.177

5.  Rapid Annotation of Seizures and Interictal-ictal Continuum EEG Patterns.

Authors:  Jin Jing; Emile d’Angremont; Sahar Zafar; Eric S Rosenthal; Mohammad Tabaeizadeh; Senan Ebrahim; Justin Dauwels; M Brandon Westover
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2018-07

6.  Understanding and Managing the Ictal-Interictal Continuum in Neurocritical Care.

Authors:  Adithya Sivaraju; Emily J Gilmore
Journal:  Curr Treat Options Neurol       Date:  2016-02       Impact factor: 3.598

7.  On-line EEG Denoising and Cleaning Using Correlated Sparse Recovery and Active Learning.

Authors:  Manish Gupta; Scott A Beckett; Elizabeth B Klerman
Journal:  Int J Wirel Inf Netw       Date:  2017-03-21

8.  Electrographic Features of Lateralized Periodic Discharges Stratify Risk in the Interictal-Ictal Continuum.

Authors:  Christopher R Newey; Pradeep Sahota; Stephen Hantus
Journal:  J Clin Neurophysiol       Date:  2017-07       Impact factor: 2.177

9.  Rhythmic and periodic EEG patterns of 'ictal-interictal uncertainty' in critically ill neurological patients.

Authors:  Johannes P Koren; Johannes Herta; Susanne Pirker; Franz Fürbass; Manfred Hartmann; Tilmann Kluge; Christoph Baumgartner
Journal:  Clin Neurophysiol       Date:  2015-11-23       Impact factor: 3.708

Review 10.  First seizure: EEG and neuroimaging following an epileptic seizure.

Authors:  Bernd Pohlmann-Eden; Mark Newton
Journal:  Epilepsia       Date:  2008       Impact factor: 5.864

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  1 in total

1.  Automated Annotation of Epileptiform Burden and Its Association with Outcomes.

Authors:  Sahar F Zafar; Eric S Rosenthal; Jin Jing; Wendong Ge; Mohammad Tabaeizadeh; Hassan Aboul Nour; Maryum Shoukat; Haoqi Sun; Farrukh Javed; Solomon Kassa; Muhammad Edhi; Elahe Bordbar; Justin Gallagher; Valdery Moura; Manohar Ghanta; Yu-Ping Shao; Sungtae An; Jimeng Sun; Andrew J Cole; M Brandon Westover
Journal:  Ann Neurol       Date:  2021-07-20       Impact factor: 11.274

  1 in total

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