| Literature DB >> 33124951 |
Chenghao Zhang1,2, Xiaolei Ren1,2, Wenchao Zhang1,2, Lile He1,2, Lin Qi1,2, Ruiqi Chen1,2, Chao Tu1,2, Zhihong Li1,2.
Abstract
Recently, increasing studies suggested that lncRNA SNHG12 was aberrantly expressed in kinds of cancers. However, definite prognostic value of SNHG12 remains unclear. We conducted this meta-analysis to evaluate the association between SNHG12 expression level and cancer prognosis. A literature retrieval was conducted by searching kinds of databases. The meta-analysis was performed by using Revman 5.2 and Stata 12.0 software. Besides, The Cancer Genome Atlas dataset was analyzed to validate the results in our meta-analysis via using Gene Expression Profiling Interactive Analysis. The pooled results showed that high SNHG12 expression significantly indicated worse overall survival and recurrence-free survival. Tumor type, sample size, survival analysis method, and cutoff value did not alter SNHG12 prognosis value according to stratified analysis results. Additionally, higher expression of SNHG12 suggested unfavorable clinicopathological outcomes including larger tumor size, lymph node metastasis, distant metastasis, and advanced clinical stage. Online cross-validation in TCGA dataset further indicated that cancer patients with upregulated SNHG12 expression had worse overall survival and disease-free survival. Therefore, elevated SNHG12 expression was associated with poor survival and unfavorable clinical outcomes in various cancers, and therefore might be a potential prognostic biomarker in human cancers. Abbreviations Akt: protein kinase B; CESC: cervical squamous cell carcinoma and endocervical adenocarcinoma; ceRNA: competitive endogenous RNA; CNKI: China National Knowledge Infrastructure; CI: confidence interval; CCNE1: cyclin E1; COAD: colon adenocarcinoma; DM: distant metastasis; DFS: disease-free survival; EMT: epithelial-mesenchymal transition; FISH: fluorescence in situ hybridization; FIGO: the International Federation of Gynecology and Obstetrics; GEPIA: Gene Expression Profiling Interactive Analysis; HR: hazard ratio; HIFα: hypoxia-inducible factor 1 α; KIRC: kidney renal clear cell carcinoma; KIRP: kidney renal papillary cell carcinoma; LIHC: hepatocellular carcinoma; LNM: lymph node metastasis; mTOR: mechanistic target of rapamycin kinase; MMP-9: matrix metalloproteinase 9; MCL1: myeloid cell leukemia 1; MLK3: mixed-lineage protein kinase 3; N/A: not available; NOS: Newcastle-Ottawa Scale; OR: odd ratio; OS: overall survival; PSA: prostate-specific antigen; PI3K: phosphoinositide 3-kinase; qRT-PCR: quantitative real-time polymerase chain reaction; READ: rectum adenocarcinoma; RFS: recurrence-free survival; SARC: sarcoma; SNHG12: small nucleolar RNA host gene 12; STAT3: signal transducer and activator of transcription 3; SOX4: SRY-box transcription factor 4; SOX5: SRY-box transcription factor 5; STAD: stomach adenocarcinoma; TCGA: The Cancer Genome Atlas; TNM: tumor node metastasis; WWP1: WW domain-containing E3 ubiquitin protein ligase 1; WHO grade: World Health Organization grade; ZEB2: zinc finger E-box-binding homeobox 2.Entities:
Keywords: LncRNA; SNHG12; cancer; prognosis; sarcoma
Year: 2020 PMID: 33124951 PMCID: PMC8291808 DOI: 10.1080/21655979.2020.1831361
Source DB: PubMed Journal: Bioengineered ISSN: 2165-5979 Impact factor: 3.269
Summary of the main characteristics of the studies included in the meta-analysis DFS: disease-free survival; DM: distant metastasis; FISH: fluorescence in situ hybridization; FIGO: the International Federation of Gynecology and Obstetrics; LNM: lymph node metastasis; N/A: not available; NOS: Newcastle-Ottawa Scale; OS: overall survival; RFS: recurrence-free survival; SNHG12: small nucleolar RNA host gene 12; TNM: tumor node metastasis; WHO grade: World Health Organization grade
| Study | Year | Tumor type | Sample | SNHG12 expression | Follow-up months | Detection | Clinical | Metastasis analysis | Outcome measure | Survival analysis | Cutoff value | NOS | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| High | Low | ||||||||||||
| Cheng, G et al | 2020 | Prostate | 199 | 99 | 100 | 160 | qRT-PCR | N/A | LNM | RFS | Univariate | Median | 8 |
| Zhao, G et al | 2019 | Gastric | 56 | 25 | 31 | 60 | qRT-PCR | TNM | LNM/DM | OS | Univariate | Mean | 9 |
| Zhang, R et al | 2019 | Gastric | 75 | 48 | 27 | 80 | FISH | TNM | LNM | OS | Multivariate | Mean | 9 |
| Wang, X et al | 2019 | Prostate | 56 | 22 | 34 | 60 | qRT-PCR | N/A | N/A | OS | Univariate | Mean | 9 |
| Song, J et al | 2019 | Prostate | 89 | 44 | 45 | N/A | qRT-PCR | N/A | LNM | N/A | Univariate | Mean | 7 |
| Liu, Y et al | 2019 | Colorectal cancer | 53 | 26 | 27 | 60 | qRT-PCR | TNM | LNM | OS | Univariate | Mean | 9 |
| Chen, Q et al | 2019 | Renal cell carcinoma | 20 | 10 | 10 | 108 | qRT-PCR | N/A | N/A | OS | Univariate | Mean | 7 |
| Zhou, S et al | 2018 | Osteosarcoma | 31 | 16 | 15 | 60 | qRT-PCR | Enneking stage | DM | OS | Univariate | Median | 9 |
| Zhou, B et al | 2018 | Osteosarcoma | 64 | 32 | 32 | 80 | qRT-PCR | N/A | N/A | OS | Univariate | Mean | 7 |
| Yang, B et al | 2018 | Gastric | 54 | 27 | 27 | 45 | qRT-PCR | N/A | DM | OS | Univariate | Mean | 9 |
| Liu, Z et al | 2018 | Nasopharyngeal carcinoma | 129 | 62 | 67 | 60 | qRT-PCR | TNM | N/A | OS | Multivariate | Median | 9 |
| Liu, X et al | 2018 | Glioblastoma | 39 | 31 | 8 | 50 | qRT-PCR | WHO grade | N/A | OS | Univariate | Mean | 9 |
| Lei, W et al | 2018 | Glioblastoma | 79 | 39 | 40 | 60 | qRT-PCR | WHO grade | N/A | OS | Univariate | Median | 9 |
| Dong, J et al | 2018 | Cervical | 76 | 38 | 38 | 80 | qRT-PCR | FIGO | LNM | OS | Univariate | Mean | 9 |
| Wang, O et al | 2017 | Breast | 102 | 51 | 51 | N/A | qRT-PCR | TNM | LNM/DM | N/A | Univariate | Median | 7 |
| Wang, J et al | 2017 | Colorectal cancer | 60 | 30 | 30 | 60 | qRT-PCR | TNM | DM | OS | Univariate | Median | 9 |
| Lan, T et al | 2017 | Hepatocellular carcinoma | 48 | 24 | 24 | 48 | qRT-PCR | TNM | N/A | OS/RFS | Univariate | Median | 9 |
| Zhang, H et al | 2017 | Gastric | 60- | 30 | 30 | 60 | qRT-PCR | TNM | LNM/DM | OS/DFS | Univariate | Median | 9 |
Figure 1.Flow diagram of the literature selection procedure
Figure 2.Forest plots of studies assessing the HRs of high SNHG12 expression in human cancers for (a) overall survival and (b) recurrence-free survival. (c) sensitivity analysis of pooled Hazard ratio for overall survival. (d) Begg`s funnel plot for publication bias of SNHG12 on overall survival
Figure 3.Stratified analyses of SNHG12 expression on overall survival according to subgroups: (a) tumor type, (b) sample size, (c) survival analysis method and (d) cutoff value
Stratified analyses of the pooled HRs of overall survival by tumor type, sample size, survival analysis method, and cutoff value CI: confidence interval; HR: hazard ratio
| Pooled HR (95% CI) | Heterogeneity | |||||
|---|---|---|---|---|---|---|
| Subgroup analysis | No. of studies | No. of patients | Fixed model | p-value | I2 (%) | p-value |
| Tumor type | ||||||
| Digestive system tumor | 7 | 406 | 1.67 (1.20, 2.33) | 0.003 | 0.0 | 0.996 |
| Others | 8 | 494 | 2.30 (1.66, 3.19) | <0.001 | 0.0 | 0.836 |
| Sample size | ||||||
| <60 | 8 | 357 | 1.72 (1.21, 2.45) | 0.002 | 0.0 | 0.991 |
| ≥60 | 7 | 543 | 2.18 (1.60, 2.97) | <0.001 | 0.0 | 0.698 |
| Survival analysis method | ||||||
| Univariate | 13 | 696 | 1.89 (1.44, 2.47) | <0.001 | 0.0 | 0.982 |
| Multivariate | 2 | 204 | 2.21 (1.39, 3.52) | 0.001 | 35.4 | 0.213 |
| Cutoff value | ||||||
| Mean | 9 | 493 | 1.69 (1.26, 2.27) | <0.001 | 0.0 | 0.991 |
| Median | 6 | 407 | 2.53 (1.73, 3.69) | <0.001 | 0.0 | 0.889 |
Figure 4.Forest plots evaluating the association between SNHG12 expression and clinicopathological parameters, including (a) tumor size (>5 cm/≤5 cm), (b) lymph node metastasis, (c) distant metastasis, (d) TNM stage, (e) WHO grade, and (f) Gleason score (>7/≤7)
Correlation between lncRNA SNHG12 expression and clinicopathologic parameters for cancers CI: confidence interval; DM: distant metastasis; LNM: lymph node metastasis; OR: odds ratio; SNHG12: small nucleolar RNA host gene 12; WHO grade: World Health Organization grade
| Heterogeneity | ||||||
|---|---|---|---|---|---|---|
| Clinicopathologic | No. of | No. of | Pooled OR (95% CI) | p-value | Model | Chi2, p-value, I2 (%) |
| Age (>60/≤60) | 3 | 191 | 0.93 (0.51, 1.70) | 0.81 | Fixed | 0.30, 0.86, 0 |
| Gender | 11 | 684 | 0.99 (0.73, 1.36) | 0.96 | Fixed | 4.86, 0.90, 0 |
| Tumor size (>5 cm/≤5 cm) | 4 | 272 | 5.05 (2.67, 9.55) | <0.001 | Fixed | 2.23, 0.53, 0 |
| LNM | 8 | 688 | 3.32 (2.32, 4.75) | <0.001 | Fixed | 12.20, 0.09, 43 |
| DM | 6 | 457 | 2.35 (1.46, 3.78) | <0.001 | Fixed | 9.00, 0.11, 44 |
| TNM stage | 8 | 583 | 3.61 (2.51, 5.17) | <0.001 | Fixed | 2.29, 0.94, 0 |
| WHO grade | 2 | 118 | 11.34 (4.60, 27.95) | <0.001 | Fixed | 0.30, 0.58, 0 |
| Gleason score (>7/≤7) | 2 | 255 | 2.69 (1.59, 4.53) | <0.001 | Fixed | 1.34, 0.25, 25 |
Figure 5.Validation of SNHG12 expression level in multiple cancers in TCGA cohort. (a) The expression level of SNHG12 in breast invasion carcinoma (BRCA), cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC), liver hepatocellular carcinoma (LIHC), colon adenocarcinoma (COAD), rectum adenocarcinoma (READ), kidney renal clear cell carcinoma (KIRC), kidney renal papillary cell carcinoma (KIRP), sarcoma (SARC), and stomach adenocarcinoma (STAD). (b) Violin plot implicating SNHG12 expression levels in different pathological stage of human pan-cancers in TCGA cohort. (c) Overall survival plot of SNHG12 in TCGA cohort (n = 9497). (d) Disease-free survival plot of SNHG12 in TCGA cohort (n = 9497)