Literature DB >> 33115272

Computationally Driven Discovery in Coagulation.

Kathryn G Link1, Michael T Stobb2, Dougald M Monroe3, Aaron L Fogelson4, Keith B Neeves5, Suzanne S Sindi6, Karin Leiderman7.   

Abstract

Bleeding frequency and severity within clinical categories of hemophilia A are highly variable and the origin of this variation is unknown. Solving this mystery in coagulation requires the generation and analysis of large data sets comprised of experimental outputs or patient samples, both of which are subject to limited availability. In this review, we describe how a computationally driven approach bypasses such limitations by generating large synthetic patient data sets. These data sets were created with a mechanistic mathematical model, by varying the model inputs, clotting factor, and inhibitor concentrations, within normal physiological ranges. Specific mathematical metrics were chosen from the model output, used as a surrogate measure for bleeding severity, and statistically analyzed for further exploration and hypothesis generation. We highlight results from our recent study that employed this computationally driven approach to identify FV (factor V) as a key modifier of thrombin generation in mild to moderate hemophilia A, which was confirmed with complementary experimental assays. The mathematical model was used further to propose a potential mechanism for these observations whereby thrombin generation is rescued in FVIII-deficient plasma due to reduced substrate competition between FV and FVIII for FXa (activated factor X).

Entities:  

Keywords:  algorithms; hemophilia A; machine learning; plasma; thrombin

Mesh:

Substances:

Year:  2020        PMID: 33115272      PMCID: PMC7769924          DOI: 10.1161/ATVBAHA.120.314648

Source DB:  PubMed          Journal:  Arterioscler Thromb Vasc Biol        ISSN: 1079-5642            Impact factor:   8.311


  57 in total

1.  Why thrombin generation? From bench to bedside.

Authors:  Louis M Aledort
Journal:  Pathophysiol Haemost Thromb       Date:  2003

Review 2.  Rethinking the coagulation cascade.

Authors:  Maureane M Hoffman; Dougald M Monroe
Journal:  Curr Hematol Rep       Date:  2005-09

3.  The impact of uncertainty in a blood coagulation model.

Authors:  Christopher M Danforth; Thomas Orfeo; Kenneth G Mann; Kathleen E Brummel-Ziedins; Stephen J Everse
Journal:  Math Med Biol       Date:  2009-05-18       Impact factor: 1.854

4.  Low factor V level ameliorates bleeding diathesis in patients with combined deficiency of factor V and factor VIII.

Authors:  Yanyan Shao; Wenman Wu; Guanqun Xu; Xuefeng Wang; Qiulan Ding
Journal:  Blood       Date:  2019-11-14       Impact factor: 22.113

5.  Surface-mediated control of blood coagulation: the role of binding site densities and platelet deposition.

Authors:  A L Kuharsky; A L Fogelson
Journal:  Biophys J       Date:  2001-03       Impact factor: 4.033

6.  A mathematical model of lipid-mediated thrombin generation.

Authors:  Sharene D Bungay; Patricia A Gentry; Rodney D Gentry
Journal:  Math Med Biol       Date:  2003-03       Impact factor: 1.854

Review 7.  Systems Analysis of Thrombus Formation.

Authors:  Scott L Diamond
Journal:  Circ Res       Date:  2016-04-29       Impact factor: 17.367

Review 8.  Transport physics and biorheology in the setting of hemostasis and thrombosis.

Authors:  L F Brass; S L Diamond
Journal:  J Thromb Haemost       Date:  2016-03-30       Impact factor: 5.824

9.  Defining the boundaries of normal thrombin generation: investigations into hemostasis.

Authors:  Christopher M Danforth; Thomas Orfeo; Stephen J Everse; Kenneth G Mann; Kathleen E Brummel-Ziedins
Journal:  PLoS One       Date:  2012-02-02       Impact factor: 3.240

10.  A local and global sensitivity analysis of a mathematical model of coagulation and platelet deposition under flow.

Authors:  Kathryn G Link; Michael T Stobb; Jorge Di Paola; Keith B Neeves; Aaron L Fogelson; Suzanne S Sindi; Karin Leiderman
Journal:  PLoS One       Date:  2018-07-26       Impact factor: 3.240

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  1 in total

1.  Sensitivity analysis of a reduced model of thrombosis under flow: Roles of Factor IX, Factor XI, and γ'-Fibrin.

Authors:  Jason Chen; Scott L Diamond
Journal:  PLoS One       Date:  2021-11-23       Impact factor: 3.240

  1 in total

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