Literature DB >> 19451209

The impact of uncertainty in a blood coagulation model.

Christopher M Danforth1, Thomas Orfeo, Kenneth G Mann, Kathleen E Brummel-Ziedins, Stephen J Everse.   

Abstract

Deterministic mathematical models of biochemical processes operate as if the empirically derived rate constants governing the dynamics are known with certainty. Our objective in this study was to explore the sensitivity of a deterministic model of blood coagulation to variations in the values of its 44 rate constants. This was accomplished for each rate constant at a given time by defining a normalized ensemble standard deviation (w(k(i))(f)(t)) that accounted for the sensitivity of the predicted concentration of each protein species to variation in that rate constant (from 10 to 1000% of the accepted value). A mean coefficient of variation derived from (w(k(i))(f)(t)) values for all protein species was defined to quantify the overall variation introduced into the model's predictive capacity at that time by the assumed uncertainty in that rate constant. A time-average value of the coefficient of variation over the 20-min simulation for each rate constant was then used to rank rate constants. The model's predictive capacity is particularly sensitive (50% of the aggregate variation) to uncertainty in five rate constants involved in the regulation of the formation and function of the factor VIIa-tissue factor complex. Therefore, our analysis has identified specific rate constants to which the predictive capability of this model is most sensitive and thus where improvements in measurement accuracy will yield the greatest increase in predictive capability.

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Year:  2009        PMID: 19451209      PMCID: PMC3499082          DOI: 10.1093/imammb/dqp011

Source DB:  PubMed          Journal:  Math Med Biol        ISSN: 1477-8599            Impact factor:   1.854


  30 in total

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Authors:  Fazoil I Ataullakhanov; Mikhail A Panteleev
Journal:  Pathophysiol Haemost Thromb       Date:  2005

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3.  A model for the formation, growth, and lysis of clots in quiescent plasma. A comparison between the effects of antithrombin III deficiency and protein C deficiency.

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4.  Characterization of the kinetic pathway for liberation of fibrinopeptides during assembly of fibrin.

Authors:  S D Lewis; P P Shields; J A Shafer
Journal:  J Biol Chem       Date:  1985-08-25       Impact factor: 5.157

5.  A model for the stoichiometric regulation of blood coagulation.

Authors:  Matthew F Hockin; Kenneth C Jones; Stephen J Everse; Kenneth G Mann
Journal:  J Biol Chem       Date:  2002-03-13       Impact factor: 5.157

6.  "Clotspeed," a mathematical simulation of the functional properties of prothrombinase.

Authors:  M E Nesheim; R P Tracy; K G Mann
Journal:  J Biol Chem       Date:  1984-02-10       Impact factor: 5.157

7.  Formation of factors IXa and Xa by the extrinsic pathway: differential regulation by tissue factor pathway inhibitor and antithrombin III.

Authors:  Genmin Lu; George J Broze; Sriram Krishnaswamy
Journal:  J Biol Chem       Date:  2004-02-12       Impact factor: 5.157

Review 8.  Mathematical models of blood coagulation and platelet adhesion: clinical applications.

Authors:  M A Panteleev; N M Ananyeva; F I Ataullakhanov; E L Saenko
Journal:  Curr Pharm Des       Date:  2007       Impact factor: 3.116

9.  The nature of the stable blood clot procoagulant activities.

Authors:  Thomas Orfeo; Kathleen E Brummel-Ziedins; Matthew Gissel; Saulius Butenas; Kenneth G Mann
Journal:  J Biol Chem       Date:  2008-02-11       Impact factor: 5.157

10.  Computationally derived points of fragility of a human cascade are consistent with current therapeutic strategies.

Authors:  Deyan Luan; Michael Zai; Jeffrey D Varner
Journal:  PLoS Comput Biol       Date:  2007-07       Impact factor: 4.475

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  21 in total

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Authors:  K G Mann
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3.  Kinetic model facilitates analysis of fibrin generation and its modulation by clotting factors: implications for hemostasis-enhancing therapies.

Authors:  Alexander Y Mitrophanov; Alisa S Wolberg; Jaques Reifman
Journal:  Mol Biosyst       Date:  2014-07-29

Review 4.  Systems biology of coagulation.

Authors:  S L Diamond
Journal:  J Thromb Haemost       Date:  2013-06       Impact factor: 5.824

5.  A mathematical model of coagulation under flow identifies factor V as a modifier of thrombin generation in hemophilia A.

Authors:  Kathryn G Link; Michael T Stobb; Matthew G Sorrells; Maria Bortot; Katherine Ruegg; Marilyn J Manco-Johnson; Jorge A Di Paola; Suzanne S Sindi; Aaron L Fogelson; Karin Leiderman; Keith B Neeves
Journal:  J Thromb Haemost       Date:  2019-11-01       Impact factor: 5.824

Review 6.  Modeling thrombin generation: plasma composition based approach.

Authors:  Kathleen E Brummel-Ziedins; Stephen J Everse; Kenneth G Mann; Thomas Orfeo
Journal:  J Thromb Thrombolysis       Date:  2014-01       Impact factor: 2.300

Review 7.  Global assays of hemostasis.

Authors:  Kathleen E Brummel-Ziedins; Alisa S Wolberg
Journal:  Curr Opin Hematol       Date:  2014-09       Impact factor: 3.284

Review 8.  Computationally Driven Discovery in Coagulation.

Authors:  Kathryn G Link; Michael T Stobb; Dougald M Monroe; Aaron L Fogelson; Keith B Neeves; Suzanne S Sindi; Karin Leiderman
Journal:  Arterioscler Thromb Vasc Biol       Date:  2020-10-29       Impact factor: 8.311

9.  Modeling Thrombin Generation in Plasma under Diffusion and Flow.

Authors:  Christian J C Biscombe; Steven K Dower; Ineke L Muir; Dalton J E Harvie
Journal:  Biophys J       Date:  2020-05-19       Impact factor: 4.033

10.  The prothrombotic phenotypes in familial protein C deficiency are differentiated by computational modeling of thrombin generation.

Authors:  Kathleen E Brummel-Ziedins; Thomas Orfeo; Peter W Callas; Matthew Gissel; Kenneth G Mann; Edwin G Bovill
Journal:  PLoS One       Date:  2012-09-12       Impact factor: 3.240

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