Literature DB >> 33111519

Ribosome Fingerprinting with a Solid-State Nanopore.

Mukhil Raveendran1, Anna Rose Leach1, Tayah Hopes2,3, Julie L Aspden2,3, Paolo Actis1,3,4.   

Abstract

Nanopores hold great potential for the analysis of complex biological molecules at the single-entity level. One particularly interesting macromolecular machine is the ribosome, responsible for translating mRNAs into proteins. In this study, we use a solid-state nanopore to fingerprint 80S ribosomes and polysomes from a human neuronal cell line andDrosophila melanogaster cultured cells and ovaries. Specifically, we show that the peak amplitude and dwell time characteristics of 80S ribosomes are distinct from polysomes and can be used to discriminate ribosomes from polysomes in mixed samples. Moreover, we are able to distinguish large polysomes, containing more than seven ribosomes, from those containing two to three ribosomes, and demonstrate a correlation between polysome size and peak amplitude. This study highlights the application of solid-state nanopores as a rapid analytical tool for the detection and characterization of ribosomal complexes.

Entities:  

Keywords:  nanopipette; nanopore; polysome; ribosome; single-molecule; translation

Mesh:

Substances:

Year:  2020        PMID: 33111519      PMCID: PMC7706116          DOI: 10.1021/acssensors.0c01642

Source DB:  PubMed          Journal:  ACS Sens        ISSN: 2379-3694            Impact factor:   7.711


  40 in total

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2.  The discovery of polyribosomes.

Authors:  Hans Noll
Journal:  Bioessays       Date:  2008-11       Impact factor: 4.345

Review 3.  Nanopore Sensing.

Authors:  Wenqing Shi; Alicia K Friedman; Lane A Baker
Journal:  Anal Chem       Date:  2016-11-18       Impact factor: 6.986

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5.  Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification.

Authors:  Matthew T Parker; Katarzyna Knop; Anna V Sherwood; Nicholas J Schurch; Katarzyna Mackinnon; Peter D Gould; Anthony Jw Hall; Geoffrey J Barton; Gordon G Simpson
Journal:  Elife       Date:  2020-01-14       Impact factor: 8.140

Review 6.  The structure and function of the eukaryotic ribosome.

Authors:  Daniel N Wilson; Jamie H Doudna Cate
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-05-01       Impact factor: 10.005

7.  Structural snapshots of actively translating human ribosomes.

Authors:  Elmar Behrmann; Justus Loerke; Tatyana V Budkevich; Kaori Yamamoto; Andrea Schmidt; Pawel A Penczek; Matthijn R Vos; Jörg Bürger; Thorsten Mielke; Patrick Scheerer; Christian M T Spahn
Journal:  Cell       Date:  2015-05-07       Impact factor: 41.582

8.  Analysis of translation using polysome profiling.

Authors:  Héloïse Chassé; Sandrine Boulben; Vlad Costache; Patrick Cormier; Julia Morales
Journal:  Nucleic Acids Res       Date:  2017-02-17       Impact factor: 16.971

9.  On demand delivery and analysis of single molecules on a programmable nanopore-optofluidic device.

Authors:  M Rahman; M A Stott; M Harrington; Y Li; M J N Sampad; L Lancaster; T D Yuzvinsky; H F Noller; A R Hawkins; H Schmidt
Journal:  Nat Commun       Date:  2019-08-16       Impact factor: 14.919

10.  miR-196b-mediated translation regulation of mouse insulin2 via the 5'UTR.

Authors:  Amaresh C Panda; Itishri Sahu; Shardul D Kulkarni; Jennifer L Martindale; Kotb Abdelmohsen; Arya Vindu; Jomon Joseph; Myriam Gorospe; Vasudevan Seshadri
Journal:  PLoS One       Date:  2014-07-08       Impact factor: 3.240

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  2 in total

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Review 2.  Promising Assays for Examining a Putative Role of Ribosomal Heterogeneity in COVID-19 Susceptibility and Severity.

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