| Literature DB >> 33108316 |
Hyung-Jun Kim1, Deokjae Han1, Jeong-Han Kim2, Daehyun Kim3, Beomman Ha4, Woong Seog4, Yeon-Kyeng Lee5, Dosang Lim5, Sung Ok Hong5, Mi-Jin Park5, JoonNyung Heo4.
Abstract
BACKGROUND: Prioritizing patients in need of intensive care is necessary to reduce the mortality rate during the COVID-19 pandemic. Although several scoring methods have been introduced, many require laboratory or radiographic findings that are not always easily available.Entities:
Keywords: COVID-19; SARS-CoV-2; machine learning; prognosis; severe acute respiratory syndrome coronavirus 2
Mesh:
Year: 2020 PMID: 33108316 PMCID: PMC7655730 DOI: 10.2196/24225
Source DB: PubMed Journal: J Med Internet Res ISSN: 1438-8871 Impact factor: 5.428
Figure 1Flowchart of the patient selection process. Patients hospitalized in 100 hospitals in South Korea from January 25, 2020, to June 3, 2020, were included. Patients who were admitted until March 20 were assigned to the derivation group, and those hospitalized after March 21 were assigned to the validation group.
Descriptive statistics for the included patients according to derivation and validation groups.
| Variable | Total patients (N=4787) | Derivation group (n=3294) | Validation group (n=1493) | ||
| Age (years), median (IQR) | 55.0 (38.0-68.0) | 57.0 (42.0-68.0) | 53.0 (30.0-66.0) | <.001 | |
| Sex (male), n (%) | 1908 (39.9) | 1227 (37.2) | 681 (45.6) | <.001 | |
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| <.001 | |
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| Never smoked | 4388 (91.7) | 3084 (93.6) | 1304 (87.4) | N/Aa |
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| Former smoker | 136 (2.8) | 97 (2.9) | 39 (2.6) | N/A |
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| Current smoker | 263 (5.5) | 114 (3.5) | 149 (10.0) | N/A |
| Body temperature (℃), median (IQR) | 36.8 (36.5-37.2) | 36.9 (36.5-37.3) | 36.8 (36.5-37.2) | .002 | |
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| Cough | 1977 (41.3) | 1537 (46.6) | 440 (29.5) | <.001 |
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| Sputum | 1358 (28.4) | 1054 (32.0) | 304 (20.4) | <.001 |
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| Headache | 764 (16.0) | 599 (18.2) | 165 (11.1) | <.001 |
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| Myalgia | 727 (15.2) | 568 (17.2) | 159 (10.7) | <.001 |
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| Sore throat | 688 (14.4) | 513 (15.6) | 175 (11.7) | .001 |
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| Dyspnea | 654 (13.7) | 543 (16.5) | 111 (7.4) | <.001 |
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| Rhinorrhea | 424 (8.9) | 318 (9.7) | 106 (7.1) | .005 |
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| Diarrhea | 399 (8.3) | 327 (9.9) | 72 (4.8) | <.001 |
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| Chest pain | 369 (7.7) | 305 (9.3) | 64 (4.3) | <.001 |
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| Nausea/vomiting | 225 (4.7) | 176 (5.3) | 49 (3.3) | .002 |
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| Fatigue | 188 (3.9) | 149 (4.5) | 39 (2.6) | .002 |
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| Anosmia | 137 (2.9) | 40 (1.2) | 97 (6.5) | <.001 |
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| Hemoptysis | 26 (0.5) | 23 (0.7) | 3 (0.2) | .051 |
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| Altered mentality | 37 (0.8) | 22 (0.7) | 15 (1.0) | .29 |
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| Arthralgia | 18 (0.4) | 16 (0.5) | 2 (0.1) | .11 |
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| Hypertension | 1234 (25.8) | 883 (26.8) | 351 (23.5) | .02 |
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| Diabetes | 741 (15.5) | 537 (16.3) | 204 (13.7) | .02 |
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| Dementia | 335 (7.0) | 182 (5.5) | 153 (10.3) | <.001 |
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| Chronic cardiac disease | 195 (4.1) | 142 (4.3) | 53 (3.6) | .25 |
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| Cancer | 160 (3.3) | 113 (3.4) | 47 (3.2) | .68 |
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| Asthma | 123 (2.6) | 95 (2.9) | 28 (1.9) | .052 |
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| Chronic liver disease | 80 (1.7) | 56 (1.7) | 24 (1.6) | .92 |
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| Heart failure | 70 (1.5) | 44 (1.3) | 26 (1.7) | .34 |
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| Chronic kidney disease | 60 (1.3) | 48 (1.5) | 12 (0.8) | .08 |
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| Chronic obstructive pulmonary disease | 42 (0.9) | 35 (1.1) | 7 (0.5) | .06 |
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| Chronic neurologic disorder | 42 (0.9) | 24 (0.7) | 18 (1.2) | .14 |
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| Chronic hematologic disorder | 35 (0.7) | 28 (0.8) | 7 (0.5) | .21 |
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| Autoimmune disease | 34 (0.7) | 27 (0.8) | 7 (0.5) | .25 |
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| Pregnancy | 20 (0.4) | 13 (0.4) | 7 (0.5) | .90 |
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| HIV infection | 10 (0.2) | 7 (0.2) | 3 (0.2) | >.99 |
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| <.001 | |
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| Independent | 4120 (86.1) | 2932 (89.0) | 1188 (79.6) | N/A |
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| Partially dependent | 375 (7.8) | 203 (6.2) | 172 (11.5) | N/A |
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| Totally dependent | 292 (6.1) | 160 (4.9) | 132 (8.8) | N/A |
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| 460 (9.6) | 332 (10.1) | 128 (8.6) | .12 | |
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| Death | 223 (4.7) | 161 (4.9) | 62 (4.2) | .30 |
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| Admission to ICUb | 221 (4.6) | 169 (5.1) | 52 (3.5) | .02 |
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| Vasopressor treatment | 119 (2.5) | 84 (2.5) | 35 (2.3) | .75 |
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| Mechanical ventilation | 66 (1.4) | 54 (1.6) | 12 (0.8) | .001 |
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| Extracorporeal life support | 27 (0.6) | 21 (0.6) | 6 (0.4) | .43 |
aN/A: not applicable.
bICU: intensive care unit.
Figure 2Receiver operating characteristic curves for the machine learning model (XGBoost) and the CURB-65 (confusion, urea, respiratory rate, blood pressure, and 65 years of age or older) score for predicting patients requiring intensive care. (A) Comparison in the derivation group, where the area under the receiver operating characteristic (AUC) curves were 0.897 for the gradient boosting machine model, and 0.836 for the CURB-65 score (P<.001). (B) Comparison in the temporal external validation group, where the AUC were 0.885 for the machine learning model, and 0.843 for the CURB-65 score (P=.01).
Sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), and F-measure for the machine learning model and the CURB-65 (confusion, urea, respiratory rate, blood pressure, and 65 years of age or older) score, with different cut-offs.
| Cut-off | Sensitivity | Specificity | PPV | NPV | F-measure |
| CURB-65 score >0.5 | 0.89 | 0.66 | 0.05 | 1.00 | 0.10 |
| XGBoost score >0.06 | 0.89 | 0.75 | 0.36 | 0.99 | 0.43 |
| CURB-65 score >1.5 | 0.53 | 0.93 | 0.14 | 0.99 | 0.22 |
| XGBoost score >0.34 | 0.53 | 0.97 | 0.63 | 0.95 | 0.58 |
| CURB-65 score >2.5 | 0.06 | 1.00 | 0.40 | 0.98 | 0.11 |
| XGBoost score >0.89 | 0.06 | 1.00 | 0.95 | 0.90 | 0.12 |
Figure 3Screenshots of the web-based application for easy usage of the developed machine learning model [20]. After input of simple patient-derived information, the probability of the need for intensive care within 30 days is calculated.