Literature DB >> 33104800

FlyRNAi.org-the database of the Drosophila RNAi screening center and transgenic RNAi project: 2021 update.

Yanhui Hu1,2, Aram Comjean1,2, Jonathan Rodiger1,2, Yifang Liu1,2, Yue Gao1,2, Verena Chung1,2, Jonathan Zirin1,2, Norbert Perrimon1,2,3, Stephanie E Mohr1,2.   

Abstract

The FlyRNAi database at the Drosophila RNAi Screening Center and Transgenic RNAi Project (DRSC/TRiP) provides a suite of online resources that facilitate functional genomics studies with a special emphasis on Drosophila melanogaster. Currently, the database provides: gene-centric resources that facilitate ortholog mapping and mining of information about orthologs in common genetic model species; reagent-centric resources that help researchers identify RNAi and CRISPR sgRNA reagents or designs; and data-centric resources that facilitate visualization and mining of transcriptomics data, protein modification data, protein interactions, and more. Here, we discuss updated and new features that help biological and biomedical researchers efficiently identify, visualize, analyze, and integrate information and data for Drosophila and other species. Together, these resources facilitate multiple steps in functional genomics workflows, from building gene and reagent lists to management, analysis, and integration of data.
© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Mesh:

Substances:

Year:  2021        PMID: 33104800      PMCID: PMC7778949          DOI: 10.1093/nar/gkaa936

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  48 in total

1.  Large-Scale Transgenic Drosophila Resource Collections for Loss- and Gain-of-Function Studies.

Authors:  Jonathan Zirin; Yanhui Hu; Luping Liu; Donghui Yang-Zhou; Ryan Colbeth; Dong Yan; Ben Ewen-Campen; Rong Tao; Eric Vogt; Sara VanNest; Cooper Cavers; Christians Villalta; Aram Comjean; Jin Sun; Xia Wang; Yu Jia; Ruibao Zhu; Ping Peng; Jinchao Yu; Da Shen; Yuhao Qiu; Limmond Ayisi; Henna Ragoowansi; Ethan Fenton; Senait Efrem; Annette Parks; Kuniaki Saito; Shu Kondo; Liz Perkins; Stephanie E Mohr; Jianquan Ni; Norbert Perrimon
Journal:  Genetics       Date:  2020-02-18       Impact factor: 4.562

2.  Improved orthology inference with Hieranoid 2.

Authors:  Mateusz Kaduk; Erik Sonnhammer
Journal:  Bioinformatics       Date:  2017-04-15       Impact factor: 6.937

3.  Drosophila cytokine unpaired 2 regulates physiological homeostasis by remotely controlling insulin secretion.

Authors:  Akhila Rajan; Norbert Perrimon
Journal:  Cell       Date:  2012-09-28       Impact factor: 41.582

4.  Design and Generation of Drosophila Single Guide RNA Expression Constructs.

Authors:  Benjamin E Housden; Yanhui Hu; Norbert Perrimon
Journal:  Cold Spring Harb Protoc       Date:  2016-09-01

5.  A Membrane Transporter Is Required for Steroid Hormone Uptake in Drosophila.

Authors:  Naoki Okamoto; Raghuvir Viswanatha; Riyan Bittar; Zhongchi Li; Sachiko Haga-Yamanaka; Norbert Perrimon; Naoki Yamanaka
Journal:  Dev Cell       Date:  2018-10-04       Impact factor: 12.270

6.  FlyRNAi.org--the database of the Drosophila RNAi screening center: 2012 update.

Authors:  Ian T Flockhart; Matthew Booker; Yanhui Hu; Benjamin McElvany; Quentin Gilly; Bernard Mathey-Prevot; Norbert Perrimon; Stephanie E Mohr
Journal:  Nucleic Acids Res       Date:  2011-11-08       Impact factor: 16.971

7.  Mouse Genome Database (MGD) 2019.

Authors:  Carol J Bult; Judith A Blake; Cynthia L Smith; James A Kadin; Joel E Richardson
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

8.  Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications.

Authors:  Antonia Lock; Midori A Harris; Kim Rutherford; Jacqueline Hayles; Valerie Wood
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

9.  Use of the CRISPR-Cas9 System in Drosophila Cultured Cells to Introduce Fluorescent Tags into Endogenous Genes.

Authors:  Justin A Bosch; Shannon Knight; Oguz Kanca; Jonathan Zirin; Donghui Yang-Zhou; Yanhui Hu; Jonathan Rodiger; Gabriel Amador; Hugo J Bellen; Norbert Perrimon; Stephanie E Mohr
Journal:  Curr Protoc Mol Biol       Date:  2020-03

Review 10.  FlyBase 2.0: the next generation.

Authors:  Jim Thurmond; Joshua L Goodman; Victor B Strelets; Helen Attrill; L Sian Gramates; Steven J Marygold; Beverley B Matthews; Gillian Millburn; Giulia Antonazzo; Vitor Trovisco; Thomas C Kaufman; Brian R Calvi
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

View more
  7 in total

1.  Identification of Cellular Genes Involved in Baculovirus GP64 Trafficking to the Plasma Membrane.

Authors:  Nicolas Buchon; Gary W Blissard; Jeffrey J Hodgson
Journal:  J Virol       Date:  2022-05-24       Impact factor: 6.549

2.  TBK1 interacts with tau and enhances neurodegeneration in tauopathy.

Authors:  Measho H Abreha; Shamsideen Ojelade; Eric B Dammer; Zachary T McEachin; Duc M Duong; Marla Gearing; Gary J Bassell; James J Lah; Allan I Levey; Joshua M Shulman; Nicholas T Seyfried
Journal:  J Biol Chem       Date:  2021-05-07       Impact factor: 5.157

3.  DRscDB: A single-cell RNA-seq resource for data mining and data comparison across species.

Authors:  Yanhui Hu; Sudhir Gopal Tattikota; Yifang Liu; Aram Comjean; Yue Gao; Corey Forman; Grace Kim; Jonathan Rodiger; Irene Papatheodorou; Gilberto Dos Santos; Stephanie E Mohr; Norbert Perrimon
Journal:  Comput Struct Biotechnol J       Date:  2021-04-11       Impact factor: 7.271

Review 4.  Drosophila Heart as a Model for Cardiac Development and Diseases.

Authors:  Anissa Souidi; Krzysztof Jagla
Journal:  Cells       Date:  2021-11-08       Impact factor: 6.600

5.  Fly Base: a guided tour of highlighted features.

Authors:  L Sian Gramates; Julie Agapite; Helen Attrill; Brian R Calvi; Madeline A Crosby; Gilberto Dos Santos; Joshua L Goodman; Damien Goutte-Gattat; Victoria K Jenkins; Thomas Kaufman; Aoife Larkin; Beverley B Matthews; Gillian Millburn; Victor B Strelets
Journal:  Genetics       Date:  2022-04-04       Impact factor: 4.402

6.  Allele-specific alternative splicing of Drosophila Ribosomal protein S21 suppresses a lethal mutation in the Phosphorylated adaptor for RNA export (Phax) gene.

Authors:  Eric L Garcia
Journal:  G3 (Bethesda)       Date:  2022-08-25       Impact factor: 3.542

Review 7.  Optogenetic approaches for understanding homeostatic and degenerative processes in Drosophila.

Authors:  Wen Kin Lim; Prameet Kaur; Huanyan Huang; Richard Shim Jo; Anupriya Ramamoorthy; Li Fang Ng; Jahnavi Suresh; Fahrisa Islam Maisha; Ajay S Mathuru; Nicholas S Tolwinski
Journal:  Cell Mol Life Sci       Date:  2021-07-07       Impact factor: 9.261

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.