Literature DB >> 32353878

Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications.

Antonia Lock1, Midori A Harris2, Kim Rutherford2, Jacqueline Hayles2, Valerie Wood3.   

Abstract

Maximizing the impact and value of scientific research requires efficient knowledge distribution, which increasingly depends on the integration of standardized published data into online databases. To make data integration more comprehensive and efficient for fission yeast research, PomBase has pioneered a community curation effort that engages publication authors directly in FAIR-sharing of data representing detailed biological knowledge from hypothesis-driven experiments. Canto, an intuitive online curation tool that enables biologists to describe their detailed functional data using shared ontologies, forms the core of PomBase's system. With 8 years' experience, and as the author response rate reaches 50%, we review community curation progress and the insights we have gained from the project. We highlight incentives and nudges we deploy to maximize participation, and summarize project outcomes, which include increased knowledge integration and dissemination as well as the unanticipated added value arising from co-curation by publication authors and professional curators.
© The Author(s) 2020. Published by Oxford University Press.

Entities:  

Year:  2020        PMID: 32353878     DOI: 10.1093/database/baaa028

Source DB:  PubMed          Journal:  Database (Oxford)        ISSN: 1758-0463            Impact factor:   3.451


  9 in total

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Journal:  PLoS Biol       Date:  2021-03-26       Impact factor: 8.029

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Authors:  Jolene Ramsey; Brenley McIntosh; Daniel Renfro; Suzanne A Aleksander; Sandra LaBonte; Curtis Ross; Adrienne E Zweifel; Nathan Liles; Shabnam Farrar; Jason J Gill; Ivan Erill; Sarah Ades; Tanya Z Berardini; Jennifer A Bennett; Siobhan Brady; Robert Britton; Seth Carbon; Steven M Caruso; Dave Clements; Ritu Dalia; Meredith Defelice; Erin L Doyle; Iddo Friedberg; Susan M R Gurney; Lee Hughes; Allison Johnson; Jason M Kowalski; Donghui Li; Ruth C Lovering; Tamara L Mans; Fiona McCarthy; Sean D Moore; Rebecca Murphy; Timothy D Paustian; Sarah Perdue; Celeste N Peterson; Birgit M Prüß; Margaret S Saha; Robert R Sheehy; John T Tansey; Louise Temple; Alexander William Thorman; Saul Trevino; Amy Cheng Vollmer; Virginia Walbot; Joanne Willey; Deborah A Siegele; James C Hu
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Authors:  Valérie de Crécy-Lagard; Rocio Amorin de Hegedus; Cecilia Arighi; Jill Babor; Alex Bateman; Ian Blaby; Crysten Blaby-Haas; Alan J Bridge; Stephen K Burley; Stacey Cleveland; Lucy J Colwell; Ana Conesa; Christian Dallago; Antoine Danchin; Anita de Waard; Adam Deutschbauer; Raquel Dias; Yousong Ding; Gang Fang; Iddo Friedberg; John Gerlt; Joshua Goldford; Mark Gorelik; Benjamin M Gyori; Christopher Henry; Geoffrey Hutinet; Marshall Jaroch; Peter D Karp; Liudmyla Kondratova; Zhiyong Lu; Aron Marchler-Bauer; Maria-Jesus Martin; Claire McWhite; Gaurav D Moghe; Paul Monaghan; Anne Morgat; Christopher J Mungall; Darren A Natale; William C Nelson; Seán O'Donoghue; Christine Orengo; Katherine H O'Toole; Predrag Radivojac; Colbie Reed; Richard J Roberts; Dmitri Rodionov; Irina A Rodionova; Jeffrey D Rudolf; Lana Saleh; Gloria Sheynkman; Francoise Thibaud-Nissen; Paul D Thomas; Peter Uetz; David Vallenet; Erica Watson Carter; Peter R Weigele; Valerie Wood; Elisha M Wood-Charlson; Jin Xu
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  9 in total

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