Literature DB >> 33100919

High-throughput Minitaturized RNA-Seq Library Preparation.

Samuel Mildrum1, Austin Hendricks1, Alexei Stortchevoi1, Noelani Kamelamela1, Vincent L Butty1, Stuart S Levine1.   

Abstract

Advances in next-generation sequencing technologies have allowed RNA sequencing to become an increasingly time efficient, cost-effective, and accessible tool for genomic research. We present here an automated and miniaturized workflow for RNA library preparation that minimizes reagent usage and processing time required per sample to generate Illumina compatible libraries for sequencing. The reduced-volume libraries show similar behavior to full-scale libraries with comparable numbers of genes detected and reproducible clustering of samples. © Association of Biomolecular Resource Facilities.

Keywords:  Sequencing, automation, Illumina

Mesh:

Substances:

Year:  2020        PMID: 33100919      PMCID: PMC7566612          DOI: 10.7171/jbt.20-3104-004

Source DB:  PubMed          Journal:  J Biomol Tech        ISSN: 1524-0215


  13 in total

1.  Validation of a fully automated robotic setup for preparation of whole blood samples for LC-MS toxicology analysis.

Authors:  David Andersen; Brian Rasmussen; Kristian Linnet
Journal:  J Anal Toxicol       Date:  2012-04-02       Impact factor: 3.367

2.  RNA-seq differential expression studies: more sequence or more replication?

Authors:  Yuwen Liu; Jie Zhou; Kevin P White
Journal:  Bioinformatics       Date:  2013-12-06       Impact factor: 6.937

Review 3.  Sequencing technologies - the next generation.

Authors:  Michael L Metzker
Journal:  Nat Rev Genet       Date:  2009-12-08       Impact factor: 53.242

4.  STAR: ultrafast universal RNA-seq aligner.

Authors:  Alexander Dobin; Carrie A Davis; Felix Schlesinger; Jorg Drenkow; Chris Zaleski; Sonali Jha; Philippe Batut; Mark Chaisson; Thomas R Gingeras
Journal:  Bioinformatics       Date:  2012-10-25       Impact factor: 6.937

5.  The real cost of sequencing: higher than you think!

Authors:  Andrea Sboner; Xinmeng Jasmine Mu; Dov Greenbaum; Raymond K Auerbach; Mark B Gerstein
Journal:  Genome Biol       Date:  2011-08-25       Impact factor: 13.583

Review 6.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

7.  RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.

Authors:  Bo Li; Colin N Dewey
Journal:  BMC Bioinformatics       Date:  2011-08-04       Impact factor: 3.307

8.  High-Throughput Miniaturized 16S rRNA Amplicon Library Preparation Reduces Costs while Preserving Microbiome Integrity.

Authors:  Jeremiah J Minich; Greg Humphrey; Rodolfo A S Benitez; Jon Sanders; Austin Swafford; Eric E Allen; Rob Knight
Journal:  mSystems       Date:  2018-11-06       Impact factor: 6.496

9.  Miniaturization and optimization of 384-well compatible RNA sequencing library preparation.

Authors:  Madeline Y Mayday; Lillian M Khan; Eric D Chow; Matt S Zinter; Joseph L DeRisi
Journal:  PLoS One       Date:  2019-01-10       Impact factor: 3.240

10.  Miniaturisation of high-throughput plasmid DNA library preparation for next-generation sequencing using multifactorial optimisation.

Authors:  Lorna Suckling; Ciaran McFarlane; Chelsea Sawyer; Stephen P Chambers; Richard I Kitney; David W McClymont; Paul S Freemont
Journal:  Synth Syst Biotechnol       Date:  2019-01-22
View more
  1 in total

1.  Mini-XT, a miniaturized tagmentation-based protocol for efficient sequencing of SARS-CoV-2.

Authors:  Marc Fuchs; Clara Radulescu; Miao Tang; Arun Mahesh; Deborah Lavin; Syed Umbreen; James McKenna; Mark Smyth; Eilís McColgan; Zoltan Molnar; Chris Baxter; Timofey Skvortsov; Aditi Singh; Fiona Rogan; Julia Miskelly; Stephen Bridgett; Derek Fairley; David A Simpson
Journal:  J Transl Med       Date:  2022-03-03       Impact factor: 5.531

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.