Literature DB >> 31292542

Peptide ligation by chemoselective aminonitrile coupling in water.

Pierre Canavelli1, Saidul Islam1, Matthew W Powner2.   

Abstract

Amide bond formation is one of the most important reactions in both chemistry and biology1-4, but there is currently no chemical method of achieving α-peptide ligation in water that tolerates all of the 20 proteinogenic amino acids at the peptide ligation site. The universal genetic code establishes that the biological role of peptides predates life's last universal common ancestor and that peptides played an essential part in the origins of life5-9. The essential role of sulfur in the citric acid cycle, non-ribosomal peptide synthesis and polyketide biosynthesis point towards thioester-dependent peptide ligations preceding RNA-dependent protein synthesis during the evolution of life5,9-13. However, a robust mechanism for aminoacyl thioester formation has not been demonstrated13. Here we report a chemoselective, high-yielding α-aminonitrile ligation that exploits only prebiotically plausible molecules-hydrogen sulfide, thioacetate12,14 and ferricyanide12,14-17 or cyanoacetylene8,14-to yield α-peptides in water. The ligation is extremely selective for α-aminonitrile coupling and tolerates all of the 20 proteinogenic amino acid residues. Two essential features enable peptide ligation in water: the reactivity and pKaH of α-aminonitriles makes them compatible with ligation at neutral pH and N-acylation stabilizes the peptide product and activates the peptide precursor to (biomimetic) N-to-C peptide ligation. Our model unites prebiotic aminonitrile synthesis and biological α-peptides, suggesting that short N-acyl peptide nitriles were plausible substrates during early evolution.

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Year:  2019        PMID: 31292542     DOI: 10.1038/s41586-019-1371-4

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  26 in total

1.  On the possible origin of protein homochirality, structure, and biochemical function.

Authors:  Jeffrey Skolnick; Hongyi Zhou; Mu Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-10       Impact factor: 11.205

2.  A possible path towards encoded protein synthesis on ancient Earth.

Authors:  Claudia Bonfio
Journal:  Nature       Date:  2022-05       Impact factor: 49.962

3.  Prebiotic synthesis of α-amino acids and orotate from α-ketoacids potentiates transition to extant metabolic pathways.

Authors:  Sunil Pulletikurti; Mahipal Yadav; Greg Springsteen; Ramanarayanan Krishnamurthy
Journal:  Nat Chem       Date:  2022-07-28       Impact factor: 24.274

4.  Prebiotic synthesis and triphosphorylation of 3'-amino-TNA nucleosides.

Authors:  Daniel Whitaker; Matthew W Powner
Journal:  Nat Chem       Date:  2022-07-01       Impact factor: 24.274

5.  Prebiotic Environments with Mg2+ and Thiophilic Metal Ions Increase the Thermal Stability of Cysteine and Non-cysteine Peptides.

Authors:  Daniele Rossetto; Luca Valer; Noël Yeh Martín; Graziano Guella; Yayoi Hongo; Sheref S Mansy
Journal:  ACS Earth Space Chem       Date:  2022-04-15       Impact factor: 3.556

6.  Prebiotic Catalytic Peptide Ligation Yields Proteinogenic Peptides by Intramolecular Amide Catalyzed Hydrolysis Facilitating Regioselective Lysine Ligation in Neutral Water.

Authors:  Jyoti Singh; Daniel Whitaker; Benjamin Thoma; Saidul Islam; Callum S Foden; Abil E Aliev; Tom D Sheppard; Matthew W Powner
Journal:  J Am Chem Soc       Date:  2022-05-31       Impact factor: 16.383

7.  Enhanced Ribozyme-Catalyzed Recombination and Oligonucleotide Assembly in Peptide-RNA Condensates.

Authors:  Kristian Le Vay; Emilie Yeonwha Song; Basusree Ghosh; T-Y Dora Tang; Hannes Mutschler
Journal:  Angew Chem Int Ed Engl       Date:  2021-11-09       Impact factor: 16.823

8.  Harnessing chemical energy for the activation and joining of prebiotic building blocks.

Authors:  Ziwei Liu; Long-Fei Wu; Jianfeng Xu; Claudia Bonfio; David A Russell; John D Sutherland
Journal:  Nat Chem       Date:  2020-10-22       Impact factor: 24.427

9.  On the emergence of homochirality and life itself.

Authors:  Jeffrey Skolnick; Mu Gao
Journal:  Biochem (Lond)       Date:  2021-01-20

10.  Binding of Dipeptides to Fatty Acid Membranes Explains Their Colocalization in Protocells but Does Not Select for Them Relative to Unjoined Amino Acids.

Authors:  Mengjun Xue; Roy A Black; Zachary R Cohen; Adrienne Roehrich; Gary P Drobny; Sarah L Keller
Journal:  J Phys Chem B       Date:  2021-07-20       Impact factor: 3.466

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