Literature DB >> 33093194

Origin of exponential growth in nonlinear reaction networks.

Wei-Hsiang Lin1,2,3,4,5, Edo Kussell6,7, Lai-Sang Young8,9,10, Christine Jacobs-Wagner1,2,3,4,5,11.   

Abstract

Exponentially growing systems are prevalent in nature, spanning all scales from biochemical reaction networks in single cells to food webs of ecosystems. How exponential growth emerges in nonlinear systems is mathematically unclear. Here, we describe a general theoretical framework that reveals underlying principles of long-term growth: scalability of flux functions and ergodicity of the rescaled systems. Our theory shows that nonlinear fluxes can generate not only balanced growth but also oscillatory or chaotic growth modalities, explaining nonequilibrium dynamics observed in cell cycles and ecosystems. Our mathematical framework is broadly useful in predicting long-term growth rates from natural and synthetic networks, analyzing the effects of system noise and perturbations, validating empirical and phenomenological laws on growth rate, and studying autocatalysis and network evolution.
Copyright © 2020 the Author(s). Published by PNAS.

Entities:  

Keywords:  ergodic theory; exponential growth; reaction networks; systems biology

Mesh:

Year:  2020        PMID: 33093194      PMCID: PMC7668091          DOI: 10.1073/pnas.2013061117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

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Authors:  M B Elowitz; S Leibler
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

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Authors:  Wim Hordijk; Mike Steel
Journal:  J Theor Biol       Date:  2004-04-21       Impact factor: 2.691

3.  Fishing, fast growth and climate variability increase the risk of collapse.

Authors:  Malin L Pinsky; David Byler
Journal:  Proc Biol Sci       Date:  2015-08-22       Impact factor: 5.349

4.  Experimental demonstration of chaos in a microbial food web.

Authors:  Lutz Becks; Frank M Hilker; Horst Malchow; Klaus Jürgens; Hartmut Arndt
Journal:  Nature       Date:  2005-06-30       Impact factor: 49.962

Review 5.  Growth rate of Escherichia coli.

Authors:  A G Marr
Journal:  Microbiol Rev       Date:  1991-06

6.  The critical size is set at a single-cell level by growth rate to attain homeostasis and adaptation.

Authors:  Francisco Ferrezuelo; Neus Colomina; Alida Palmisano; Eloi Garí; Carme Gallego; Attila Csikász-Nagy; Martí Aldea
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

7.  A whole-cell computational model predicts phenotype from genotype.

Authors:  Jonathan R Karr; Jayodita C Sanghvi; Derek N Macklin; Miriam V Gutschow; Jared M Jacobs; Benjamin Bolival; Nacyra Assad-Garcia; John I Glass; Markus W Covert
Journal:  Cell       Date:  2012-07-20       Impact factor: 41.582

8.  Long-term cyclic persistence in an experimental predator-prey system.

Authors:  Bernd Blasius; Lars Rudolf; Guntram Weithoff; Ursula Gaedke; Gregor F Fussmann
Journal:  Nature       Date:  2019-12-18       Impact factor: 49.962

9.  Emergence of robust growth laws from optimal regulation of ribosome synthesis.

Authors:  Matthew Scott; Stefan Klumpp; Eduard M Mateescu; Terence Hwa
Journal:  Mol Syst Biol       Date:  2014-08-22       Impact factor: 11.429

10.  Temporal fluxomics reveals oscillations in TCA cycle flux throughout the mammalian cell cycle.

Authors:  Eunyong Ahn; Praveen Kumar; Dzmitry Mukha; Amit Tzur; Tomer Shlomi
Journal:  Mol Syst Biol       Date:  2017-11-06       Impact factor: 11.429

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