Literature DB >> 33084935

Genome sequencing and phylogenetic reconstruction reveal a potential fourth rhinovirus species and its worldwide distribution.

Kim Tien Ng1,2, Yutaka Takebe3,4, Adeeba Kamarulzaman1, Kok Keng Tee5,6.   

Abstract

Genome sequences of members of a potential fourth rhinovirus (RV) species, provisionally denoted as rhinovirus A clade D, from patients with acute respiratory infection were determined. Bayesian coalescent analysis estimated that clade D emerged around the 1940s and diverged further around 2006-2007 into two distinctive sublineages (RV-A8-like and RV-A45-like) that harbored unique "clade-defining" substitutions. Similarity plots and bootscan mapping revealed a recombination breakpoint located in the 5'-UTR region of members of the RV-A8-like sublineage. Phylogenetic reconstruction revealed the distribution of clade D viruses in the Asia Pacific region and in Europe, underlining its worldwide distribution.

Entities:  

Year:  2020        PMID： 33084935     DOI： 10.1007/s00705-020-04855-5

Source DB:  PubMed          Journal:  Arch Virol        ISSN： 0304-8608            Impact factor:   2.574


  14 in total

1.  Classification and evolution of human rhinoviruses.

Authors:  Ann C Palmenberg; James E Gern
Journal:  Methods Mol Biol       Date:  2015

2.  Viral Load and Sequence Analysis Reveal the Symptom Severity, Diversity, and Transmission Clusters of Rhinovirus Infections.

Authors:  Kim Tien Ng; Xiang Yong Oong; Sin How Lim; Jack Bee Chook; Yutaka Takebe; Yoke Fun Chan; Kok Gan Chan; Nik Sherina Hanafi; Yong Kek Pang; Adeeba Kamarulzaman; Kok Keng Tee
Journal:  Clin Infect Dis       Date:  2018-07-02       Impact factor: 9.079

3.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Authors:  Sudhir Kumar; Glen Stecher; Michael Li; Christina Knyaz; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

4.  BEAST: Bayesian evolutionary analysis by sampling trees.

Authors:  Alexei J Drummond; Andrew Rambaut
Journal:  BMC Evol Biol       Date:  2007-11-08       Impact factor: 3.260

5.  The Emerging Role of Rhinoviruses in Lower Respiratory Tract Infections in Children - Clinical and Molecular Epidemiological Study From Croatia, 2017-2019.

Authors:  Sunčanica Ljubin-Sternak; Tomislav Meštrović; Irena Ivković-Jureković; Branko Kolarić; Anamarija Slović; Dubravko Forčić; Tatjana Tot; Maja Mijač; Jasmina Vraneš
Journal:  Front Microbiol       Date:  2019-12-03       Impact factor: 5.640

6.  Two cases of primary human parechovirus pneumonia in adults.

Authors:  Takashi Nishida; Takashi Ishiguro; Kenji Takano; Taisuke Isono; Yoichi Kobayashi; Yoshihiko Shimizu; Noboru Takayanagi
Journal:  Respir Med Case Rep       Date:  2019-10-16

7.  Molecular evolution of the VP1, VP2, and VP3 genes in human rhinovirus species C.

Authors:  Makoto Kuroda; Shoichi Niwa; Tsuyoshi Sekizuka; Hiroyuki Tsukagoshi; Masaru Yokoyama; Akihide Ryo; Hironori Sato; Naoko Kiyota; Masahiro Noda; Kunihisa Kozawa; Komei Shirabe; Takashi Kusaka; Naoki Shimojo; Shunji Hasegawa; Kazuko Sugai; Masatsugu Obuchi; Masato Tashiro; Kazunori Oishi; Haruyuki Ishii; Hirokazu Kimura
Journal:  Sci Rep       Date:  2015-02-02       Impact factor: 4.379

8.  Investigating asthma heterogeneity through shared and distinct genetics: Insights from genome-wide cross-trait analysis.

Authors:  Zhaozhong Zhu; Kohei Hasegawa; Carlos A Camargo; Liming Liang
Journal:  J Allergy Clin Immunol       Date:  2020-07-18       Impact factor: 10.793

9.  A prospective case-control study on the association of Rhinovirus nasopharyngeal viral load and viremia in South African children hospitalized with severe pneumonia.

Authors:  Vicky L Baillie; David P Moore; Azwifarwi Mathunjwa; Palesa Morailane; Eric A F Simões; Shabir A Madhi
Journal:  J Clin Virol       Date:  2020-02-11       Impact factor: 3.168

10.  Rhinovirus Type in Severe Bronchiolitis and the Development of Asthma.

Authors:  Eija Bergroth; Matilda Aakula; Varpu Elenius; Sami Remes; Eija Piippo-Savolainen; Matti Korppi; Pedro A Piedra; Yury A Bochkov; James E Gern; Carlos A Camargo; Tuomas Jartti
Journal:  J Allergy Clin Immunol Pract       Date:  2019-09-11
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  3 in total

1.  Combining the advantages of AlexNet convolutional deep neural network optimized with anopheles search algorithm based feature extraction and random forest classifier for COVID-19 classification.

Authors:  Sumaiya Begum Akbar; Kalaiselvi Thanupillai; Suganthi Sundararaj
Journal:  Concurr Comput       Date:  2022-04-10       Impact factor: 1.831

2.  Application of a VP4/VP2-inferred transmission clusters in estimating the impact of interventions on rhinovirus transmission.

Authors:  Kim Tien Ng; Liang Jie Ng; Xiang Yong Oong; Jack Bee Chook; Kok Gan Chan; Yutaka Takebe; Adeeba Kamarulzaman; Kok Keng Tee
Journal:  Virol J       Date:  2022-03-04       Impact factor: 4.099

3.  A severe case of human rhinovirus A45 with central nervous system involvement and viral sepsis.

Authors:  Jun Liu; Hongwei Zhao; Ziheng Feng; Yingchao Liu; Qianyu Feng; Suyun Qian; Lili Xu; Hengmiao Gao; Zhengde Xie
Journal:  Virol J       Date:  2022-04-22       Impact factor: 5.913
  3 in total

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