| Literature DB >> 33081412 |
René Fournier1, Alexa R Green2, Arthur Greenberg2, Edward Lee-Ruff1, Joel F Liebman3, Anita Rágyanszki4.
Abstract
Density functional calculations and up to five different basis sets have been applied to the exploEntities:
Keywords: DFT calculations; N-Methyl-7-azanorcaradiene; N-methylazepine; N-methylpyrrole; NICS; amine N-oxides; antiaromaticity; aromaticity
Mesh:
Substances:
Year: 2020 PMID: 33081412 PMCID: PMC7594072 DOI: 10.3390/molecules25204767
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Scheme 1Relationships between N-Methylazepine and 7-Azanorcaradiene Isomers.
Scheme 2Relationships between N-methylazepine and 7-azanorcaradiene N-oxides.
Relative enthalpies and free energies of the four stereoisomers of 1-methylazepine (6a and 6b) and 7-azanorcaradiene (7a and 7b) as a function of computation methodologies (1.000 kcal = 4.184 kJ). In each column the lowest enthalpy or free energy value is set = 0.0 kcal/mol. (6a is lower in enthalpy than 6b and is easily converted to 6b).
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| 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
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| 5.2 | 7.5 | 3.9 | 4.7 | 5.7 |
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| 6.2 | 6.3 | 3.0 | ||
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| 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
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| 8.2 | 8.5 | 4.8 | 5.6 | 6.6 |
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| 7.1 | 7.4 | 3.9 | ||
Relative enthalpies and free energies of the four stereoisomers of 1-methylazepine N-oxide (8a and 8b) and 7-azanorcaradiene N-oxide (9a and 9b) as a function of computation methodologies (1.000 kcal = 4.184 kJ). In each column the lowest enthalpy or free energy value is set = 0.0 kcal/mol. (8a and 8b are easily interconverted as they are similar in enthalpy; the first three calculations favor 8a and the APFD favor 8b).
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| 1.5 | 1.3 | 4.9 | ||
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| 5.1 | 4.3 | |||
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| 0.1 | 0.0 | 0.0 | 0.0 | 0.0 |
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| 0.0 | 0.1 | 0.0 | ||
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| 1.4 | 1.4 | 5.0 | ||
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| 5.2 | 4.3 | |||
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| 0.0 | 0.0 | 0.1 | 0.0 | 0.0 |
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| 0.0 | 0.1 | 0.0 | ||
Calculated bond dissociation enthalpies (BDE, kcal/mol; 1.000 kcal = 4.184 kJ) for selected N-oxides including pyridine N-oxide (PNO, 10) and trimethylamine N-oxide (12, TMAO). For the BDE values for N-methylazepine N-oxide (8 → 6) and its 7-azanorcaradiene valence isomer (9 → 7), the lowest enthalpy values were employed for each stereoisomeric pair (e.g., 6a vs. 6b).
| Molecule | B3LYP/6-31G(d) | B3LYP/6-31G(d,p) | M06/6-311+G(d,p) | APFD/aug-cc-pVDZ | APFD/aug-cc-pVTZ |
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| PNO ( | 62.1 | 62.3 | 61.5 | ||
| TMAO ( | 48.6 | 48.7 | 51.5 | ||
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| 40.7 | 40.8 | 42.1 | 41.6 | 44.4 |
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| 47.3 | 49.6 | 50.9 | 51.4 | 54.0 |
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| 47.4 | 47.6 | 50.0 | ||
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| 14.7 | 14.6 | 17.6 | 13.1 | 16.9 |
Figure 1Enthalpy comparisons (kcal/mol; 1.000 kcal = 4.184 kJ) between the lowest enthalpy stereoisomers of N-methylazepine N-oxide (8) and its 7-azanorcaradiene N-oxide valence isomer (9) and the corresponding amines (6 and 7) plus triplet oxygen atom (3O). The values employed in this figure are from M06/6-311+G(d,p) calculations.
Calculated enthalpies of reaction (ΔHr, kcal/mol) for isodesmic Equations (3) and (4).
| Equation | B3LYP/6-31G(d) | B3LYP/6-31G(d,p) | M06/6-311+G(d,p) |
|---|---|---|---|
| (3) | +1.2 | +1.1 | +1.5 |
| (4) | −0.1 | +2.0 | +0.9 |
Scheme 3Hydrogenations of N-Methylpyrrole and related molecules.
Computed enthalpies of reaction (kcal/mol; 1.000 kcal = 4.184 kJ) for hydrogenation reactions (1)–(3) of N-methylpyrrole and its reduction products.
| Hydrogenation | (1) | (2) | (3) |
|---|---|---|---|
| B3LYP/6-31G(d,p) | −27.1 | −24.7 | −29.3 |
| APFD/aug-cc-pVDZ | −34.6 | −28.9 | −33.7 |
| APFD/aug-cc-pVTZ | −28.2 | −23.9 | −28.8 |
Scheme 4Hydrogenations of N-Methylpyrrole N-oxide and related molecules.
Computed enthalpies of reaction (kcal/mol; 1.000 kcal = 4.184 kJ) for hydrogenation reactions (1)–(3) of N-methylpyrrole N-oxide and its reduction products.
| Reaction | (1) | (2) | (3) |
|---|---|---|---|
| B3LYP/6-31G(d,p) | −60.9 | −29.3 | −28.9 |
| APFD/aug-cc-pVDZ | −70.7 | −34.2 | −33.3 |
| APFD/aug-cc-pVTZ | −67.2 | −32.4 | −31.8 |
Calculated nucleus-independent chemical shift (NICS)(0) values at two levels. A significant positive value (e.g., >5.0) connotes significant aromaticity. Significant negative values connote antiaromaticity.
| B3LYP/6-31G(d,p) | ||
| Shielding (ppm) | 15.15 | 2.34 |
| APFD/aug-cc-pVTZ | ||
| Shielding (ppm) | 13.38 | 1.68 |
Experimental gas phase electron diffraction (GED) and microwave (MW) structures corresponding to the designated bonds in N-methylpyrrole (Part A) in comparison with computed structures (Part B).
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| 1 | 1.372 | 1.361 | |
| 2 | 1.383 | 1.393 | |
| 3 | 1.425 | 1.422 | |
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| 1 | 1.376 | 1.369 | 1.364 |
| 2 | 1.378 | 1.379 | 1.372 |
| 3 | 1.423 | 1.421 | 1.415 |
Computed structures for N-methylpyrrole N-oxide corresponding to the designated bonds shown in the figure in Table 8. There are no experimental data for this presently unknown molecule. Computed bond lengths (Angstroms) for N-methylpyrrole N-oxide.
| Bond | B3LYP/6-31G(d,p) | APFD/aug-cc-pVDZ | APFD/aug-cc-pVTZ |
|---|---|---|---|
| 1 | 1.479 | 1.470 | 1.467 |
| 2 | 1.335 | 1.336 | 1.327 |
| 3 | 1.475 | 1.472 | 1.468 |
Computed enthalpies of reaction (kcal/mol; 1.000 kcal = 4.184 kJ) for hydrogenation reactions (1)–(4) of N-methylazepine and its reduction products.
| Hydrogenation | (1) | (2) | (3) | (4) |
|---|---|---|---|---|
| B3LYP/6-31G(d,p) | −67.3 | −22.4 | −29.8 | −25.8 |
| APFD/aug-cc-pVDZ | −82.8 | −27.8 | −34.7 | −31.0 |
| APFD/aug-cc-pVTZ | −77.1 | −25.5 | −32.6 | −29.0 |
Scheme 5Hydrogenations of N-Methylazepine and related molecules.
Scheme 6Hydrogenations of N-Methylazepine N-oxide and related molecules.
Computed enthalpies of reaction (kcal/mol; 1.000 kcal = 4.184 kJ) for hydrogenation.
| Hydrogenation | (1) | (2) | (3) | (4) |
|---|---|---|---|---|
| B3LYP/6-31G(d,p) | −74.3 | −28.7 | −32.1 | −25.4 |
| APFD/aug-cc-pVDZ | −90.6 | −34.3 | −37.4 | −30.5 |
| APFD/aug-cc-pVTZ | −84.7 | −31.9 | −34.1 | −28.0 |
Calculated NICS(0) values at two levels. A significant positive value (e.g., >5.0) connotes significant aromaticity. Significant negative values connote antiaromaticity.
| B3LYP/6-31G(d,p) | ||
| Shielding (ppm) | −5.13 | +0.26 |
| APFD/aug-cc-pVTZ | ||
| Shielding (ppm) | −5.38 | +0.73 |
Computational structures corresponding to the designated bonds in N-Methylazepine (lowest energy conformation). There are no corresponding experimental data. C−C Bond Lengths in Angstroms for N-Methylazepine.
| Bond | B3LYP/6-31G(d,p) | APFD/aug-cc-pVDZ | APFD/aug-cc-pVTZ |
|---|---|---|---|
| 1 | 1.420 | 1.414 | 1.409 |
| 2 | 1.344 | 1.345 | 1.336 |
| 3 | 1.459 | 1.456 | 1.452 |
| 4 | 1.352 | 1.354 | 1.345 |
| 5 | 1.459 | 1.456 | 1.452 |
| 6 | 1.344 | 1.345 | 1.336 |
| 7 | 1.420 | 1.414 | 1.409 |
| C2−C7 distance 2.387 | C2−C7 distance 2.362 | C2−C7 distance 2.363 |
Computational structures corresponding to the designated bonds (see Table 13) in the presently unknown N-Methylazepine N-oxide (lowest energy conformation). C−C Bond Lengths in Angstroms for N-Methylazepine N-oxide.
| Bond | B3LYP/6-31G(d,p) | APFD/aug-cc-pVDZ | APFD/aug-cc-pVTZ |
|---|---|---|---|
| 1 | 1.469 | 1.461 | 1.456 |
| 2 | 1.345 | 1.347 | 1.337 |
| 3 | 1.440 | 1.437 | 1.431 |
| 4 | 1.355 | 1.356 | 1.347 |
| 5 | 1.440 | 1.437 | 1.431 |
| 6 | 1.345 | 1.347 | 1.337 |
| 7 | 1.469 | 1.461 | 1.456 |
| C2−C7 distance 2.550 | C2−C7 distance 2.537 | C2−C7 distance 2.531 |
Figure 2Calculated structures for (A) most stable conformation of N-methylazepine, (B) most stable conformation of N-methylazepine N-oxide, (C) fully planar ring structure of N-methylazepine N-oxide (1.6 kcal/mol or 6.9 kJ/mol higher enthalpy than the most stable conformation).