Literature DB >> 26593191

A Density Functional with Spherical Atom Dispersion Terms.

Amy Austin1, George A Petersson1, Michael J Frisch1,2, Frank J Dobek1, Giovanni Scalmani2, Kyle Throssell1.   

Abstract

A new hybrid density functional, APF, is introduced, which avoids the spurious long-range attractive or repulsive interactions that are found in most density functional theory (DFT) models. It therefore provides a sound baseline for the addition of an empirical dispersion correction term, which is developed from a spherical atom model (SAM). The APF-D empirical dispersion model contains nine adjustable parameters that were selected based on a very small training set (15 noble gas dimers and 4 small hydrocarbon dimers), along with two computed atomic properties (ionization potential and effective atomic polarizability) for each element. APF-D accurately describes a large portion of the potential energy surfaces of complexes of noble gas atoms with various diatomic molecules involving a wide range of elements and of dimers of small hydrocarbons, and it reproduces the relative conformational energies of organic molecules. The accuracy for these weak interactions is comparable to that of CCSD(T)/aug-cc-pVTZ calculations. The accuracy in predicting the geometry of hydrogen bond complexes is competitive with other models involving DFT and empirical dispersion.

Entities:  

Year:  2012        PMID: 26593191     DOI: 10.1021/ct300778e

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  39 in total

1.  N⁻₃ azide anion confined inside finite-size carbon nanotubes.

Authors:  Stefano Battaglia; Stefano Evangelisti; Noelia Faginas-Lago; Thierry Leininger
Journal:  J Mol Model       Date:  2017-09-26       Impact factor: 1.810

2.  Fluorescent probes with high pKa values based on traditional, near-infrared rhodamine, and hemicyanine fluorophores for sensitive detection of lysosomal pH variations.

Authors:  Wafa Mazi; Rashmi Adhikari; Yibin Zhang; Shuai Xia; Mingxi Fang; Rudy L Luck; Momoko Tajiri; Ashutosh Tiwari; Marina Tanasova; Haiying Liu
Journal:  Methods       Date:  2019-07-22       Impact factor: 3.608

3.  Cell Membrane-Specific Fluorescent Probe Featuring Dual and Aggregation-Induced Emissions.

Authors:  Yibin Zhang; Yunnan Yan; Shuai Xia; Shulin Wan; Tessa E Steenwinkel; Jerry Medford; Emma Durocher; Rudy L Luck; Thomas Werner; Haiying Liu
Journal:  ACS Appl Mater Interfaces       Date:  2020-04-24       Impact factor: 9.229

4.  New near-infrared rhodamine dyes with large Stokes shifts for sensitive sensing of intracellular pH changes and fluctuations.

Authors:  Yibin Zhang; Shuai Xia; Mingxi Fang; Wafa Mazi; Yanbo Zeng; Taylor Johnston; Adam Pap; Rudy L Luck; Haiying Liu
Journal:  Chem Commun (Camb)       Date:  2018-07-05       Impact factor: 6.222

5.  Ratiometric fluorescent probes based on through-bond energy transfer of cyanine donors to near-infrared hemicyanine acceptors for mitochondrial pH detection and monitoring of mitophagy.

Authors:  Shuai Xia; Jianbo Wang; Yibin Zhang; Nick Whisman; Jianheng Bi; Tessa E Steenwinkel; Shulin Wan; Jerry Medford; Momoko Tajiri; Rudy L Luck; Thomas Werner; Haiying Liu
Journal:  J Mater Chem B       Date:  2020-02-26       Impact factor: 6.331

6.  Acriflavine in aqueous solution: excitation and hydration.

Authors:  Victor Kostjukov
Journal:  J Mol Model       Date:  2022-06-20       Impact factor: 1.810

7.  Evaluating dispersion forces for optimization of van der Waals complexes using a non-empirical functional.

Authors:  Alya A Arabi
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2016-11-13       Impact factor: 4.226

8.  Near-infrared fluorescent probes with BODIPY donors and rhodamine and merocyanine acceptors for ratiometric determination of lysosomal pH variance.

Authors:  Shuai Xia; Mingxi Fang; Jianbo Wang; Jianheng Bi; Wafa Mazi; Yibin Zhang; Rudy L Luck; Haiying Liu
Journal:  Sens Actuators B Chem       Date:  2019-05-04       Impact factor: 7.460

9.  Free Radical Isomerizations in Acetylene Bromoboration Reaction.

Authors:  Hugo Semrád; Ctibor Mazal; Markéta Munzarová
Journal:  Molecules       Date:  2021-04-25       Impact factor: 4.411

10.  A near-infrared fluorescent probe based on a hemicyanine dye with an oxazolidine switch for mitochondrial pH detection.

Authors:  Wafa Mazi; Yunnan Yan; Yibin Zhang; Shuai Xia; Shulin Wan; Momoko Tajiri; Rudy L Luck; Haiying Liu
Journal:  J Mater Chem B       Date:  2021-01-28       Impact factor: 6.331

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